PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma8g01190.1
Common NameZOSMA_8G01190
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 529aa    MW: 60275.7 Da    PI: 9.1612
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma8g01190.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.4e-1756102148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg WT+eEdell +a + +  ++Wk+Ia++++  Rt+ qc +rwqk+l
   Zosma8g01190.1  56 RGGWTPEEDELLSKAAQYYSEKNWKKIAEYFP-QRTDVQCLHRWQKVL 102
                      789*****************************.************986 PP
2Myb_DNA-binding57.62.8e-18108153147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +g+W++eEd +++++v+++G ++W++Ia+ +  gR +kqc++rw++ 
   Zosma8g01190.1 108 KGPWSQEEDAKIIELVEKYGCKNWSLIAKSIK-GRIGKQCRERWHNQ 153
                      79*****************************9.************96 PP
3Myb_DNA-binding59.95.7e-19160203146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eEd++l++a++++G++ W+ Ia+++  gR+++ +k++w++
   Zosma8g01190.1 160 KDPWTLEEDQKLICAHELHGNK-WSEIAKKLS-GRSDNAIKNHWNT 203
                      689*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.66351102IPR017930Myb domain
SuperFamilySSF466893.52E-1654109IPR009057Homeodomain-like
SMARTSM007172.5E-1455104IPR001005SANT/Myb domain
PfamPF002494.7E-1556102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-2058112IPR009057Homeodomain-like
CDDcd001677.50E-1259102No hitNo description
PROSITE profilePS5129431.353103158IPR017930Myb domain
SuperFamilySSF466898.63E-32105201IPR009057Homeodomain-like
SMARTSM007171.1E-15107156IPR001005SANT/Myb domain
CDDcd001673.63E-14110152No hitNo description
PfamPF139212.0E-18111171No hitNo description
Gene3DG3DSA:1.10.10.605.4E-27113161IPR009057Homeodomain-like
PROSITE profilePS5129423.461159209IPR017930Myb domain
SMARTSM007172.1E-17159207IPR001005SANT/Myb domain
CDDcd001674.20E-13162203No hitNo description
Gene3DG3DSA:1.10.10.603.5E-23162209IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MLEQTDLDDK GKKSVVINEQ ALKKEKNVAM VVVDSSVPSP IANSRRLKGP IRRSTRGGWT  60
PEEDELLSKA AQYYSEKNWK KIAEYFPQRT DVQCLHRWQK VLNPNLVKGP WSQEEDAKII  120
ELVEKYGCKN WSLIAKSIKG RIGKQCRERW HNQLNPKIRK DPWTLEEDQK LICAHELHGN  180
KWSEIAKKLS GRSDNAIKNH WNTSVRKKIA SRSRITSDDS VEINISTKRQ HLNLNHVLIP  240
DMETPQRSQS YLEEDQMHPQ LNSNALRCGE EYSQRFNYRY TSDSKMMSSG SQKVFEKIDE  300
HKFTKDDAMD AKLETCASVG NIIDISMHKK TPSTSGYHCC VDSVSSNHFN CSNLDKHTIS  360
AFIPWQHSAS PNLSSASIPR QHSASPNLPF SSSLNGMDTT DSVLRKAARS FKNTPSIIRK  420
RHSLPRQLVV DHEESGNGSC LGSVDTTLRI SIHRSEHEED RIHGDSSKTL VPPCVKYKGK  480
RLQQEFDKEW FATRFNTDRQ MSYDDSLPKG LLDLATANRE SDKSDTTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C8e-65562099159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-65562099159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NK180.0A0A0K9NK18_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30993880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.24e-83myb domain protein 3r-5