PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma90g00290.1

Common Name

ZOSMA_90G00290

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

WRKY

Protein Properties

Length: 127aa MW: 14983.3 Da PI: 9.722

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma90g00290.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	62.1	9.6e-20	85	125	2	41
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkvers 41 +Dgy+WrKYGqK k+++fpr+Y++C + Cp+kkkv+r+ Zosma90g00290.1 85 RDGYQWRKYGQKITKDNPFPRAYFKCVRSpICPAKKKVQRC 125 7***********************9988*******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.1E-19	78	125	IPR003657	WRKY domain
PROSITE profile	PS50811	18.556	79	126	IPR003657	WRKY domain
SuperFamily	SSF118290	4.32E-17	81	125	IPR003657	WRKY domain
SMART	SM00774	1.6E-11	84	126	IPR003657	WRKY domain
Pfam	PF03106	1.5E-16	86	125	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MERAGFQDEK KVKKMAEEAE RLRLENRELE LKIQSIYENY STLEGYMKTV YEQSMESVRS 60 TQTLIPKPTQ ILFKTDESDN SLIVRDGYQW RKYGQKITKD NPFPRAYFKC VRSPICPAKK 120 KVQRCM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019055526.1	2e-34	PREDICTED: probable WRKY transcription factor 40
TrEMBL	A0A0K9NJR2	2e-88	A0A0K9NJR2_ZOSMR; Uncharacterized protein
STRING	XP_010265616.1	2e-31	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1822	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80840.1	3e-24	WRKY DNA-binding protein 40

Link Out ? help Back to Top
Phytozome	Zosma90g00290.1