PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma91g00130.1
Common NameZOSMA_91G00130
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C3H
Protein Properties Length: 446aa    MW: 48506.2 Da    PI: 6.8979
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma91g00130.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.14e-106385426
                     ---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                     + C +f++ G+C yG++C+++H+
  Zosma91g00130.1 63 PDCIYFLKHGICGYGSNCRYNHS 85
                     79********************8 PP
2zf-CCCH27.64.9e-09103127327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      ++ C++f+r G CkyG +Ck++H++
  Zosma91g00130.1 103 QPDCQHFLRAGSCKYGYTCKYNHPK 127
                      789********************96 PP
3zf-CCCH39.11.2e-12149172427
                      ---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      + C+++++tG+Ck+G +CkF+H++
  Zosma91g00130.1 149 KSCPYYMKTGYCKFGISCKFNHPQ 172
                      66********************97 PP
4zf-CCCH38.42.1e-12288313227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      +++ C++++++G CkyG++Ck++H++
  Zosma91g00130.1 288 DQPDCQYYMKNGSCKYGSSCKYHHPR 313
                      6899********************96 PP
5zf-CCCH28.52.6e-09334358226
                      -S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                      +++ C f++ +GtCkyG  CkF H+
  Zosma91g00130.1 334 GQAVCGFYSNYGTCKYGLGCKFDHP 358
                      7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.9E-45986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.9815987IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-86385IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-56487IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.2E-46586IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192100128IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-4100127IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5104131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.756145173IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6145173IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5147172IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10148172IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5150171IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-6286313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.455286314IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10288313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-6289315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-5292313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.02E-5331358IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319332360IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-4332359IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6334358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MPENNAVSDS SEVSVENLQE SIENIKIEDA DKDLEGGALL PHSNNVIGVK EMDAIVQNGR  60
AVPDCIYFLK HGICGYGSNC RYNHSVRGQE HISISELPER VGQPDCQHFL RAGSCKYGYT  120
CKYNHPKNKL HEGPLSYNSY GLPMRQDEKS CPYYMKTGYC KFGISCKFNH PQPAAGHENV  180
YHMPGSSVCA PLGSSTASSS GLPLTGGIPA WSPRPYISNP PINGLSSYMP FVYPPLHGII  240
PAQHGLNSYM GPINPITTTG AIVASPTSNS SHIQYGYNAH ILFPERPDQP DCQYYMKNGS  300
CKYGSSCKYH HPRDRITSSA ACTVGPLGLP LRPGQAVCGF YSNYGTCKYG LGCKFDHPLT  360
GYYNYGTAST YPPSNPSAQI HYQRNSSVIS TPFDVSKSKT LNLTHGASKS EETPINVECV  420
DSNEEVQQNS SEIISSDSLQ VTEAI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NJF50.0A0A0K9NJF5_ZOSMR; Zinc finger CCCH domain-containing protein 26
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.29e-83C3H family protein