PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma91g00550.1

Common Name

ZOSMA_91G00550

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

MYB

Protein Properties

Length: 217aa MW: 24661.5 Da PI: 8.6741

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma91g00550.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.2	5.1e-15	28	73	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed l ++v +G+ +W++Ia ++ gR++k+c++rw++ Zosma91g00550.1 28 RGHWRPAEDTMLRELVSAYGPQNWNLIADRLH-GRSGKSCRLRWFNQ 73 899***************************.*********996 PP
2	Myb_DNA-binding	52.2	1.4e-16	80	123	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+e+l a++ +G++ W+ Iar + gRt++ +k++w+ Zosma91g00550.1 80 RRAFSEEEEEKLMAAHRIYGNK-WAMIARLFS-GRTDNAVKNHWHV 123 678*****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.389	23	74	IPR017930	Myb domain
SMART	SM00717	8.5E-13	27	76	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.24E-27	28	121	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-25	29	81	IPR009057	Homeodomain-like
CDD	cd00167	8.59E-12	31	72	No hit	No description
Pfam	PF13921	4.3E-15	31	91	No hit	No description
PROSITE profile	PS51294	25.478	75	129	IPR017930	Myb domain
SMART	SM00717	2.4E-13	79	127	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.9E-20	82	128	IPR009057	Homeodomain-like
CDD	cd00167	5.62E-11	82	122	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MAPTIDKDCH DDDHSKKQQK QTAVVYGRGH WRPAEDTMLR ELVSAYGPQN WNLIADRLHG 60 RSGKSCRLRW FNQLDPKINR RAFSEEEEEK LMAAHRIYGN KWAMIARLFS GRTDNAVKNH 120 WHVIMARKYR DQSDHHSPPP PALAAAASGN YNNNYYHHHH GLYHFPAPLM IALKQHQHLQ 180 LQDHQSPPIS ATESSSEPTD VSSSPSFIDF LGVGAT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	2e-31	28	128	7	107	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269\|PubMed:19542355}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017222090.1	4e-69	PREDICTED: transcription factor MYB80
Swissprot	Q9SEZ4	2e-65	MY105_ARATH; Transcription factor MYB105
TrEMBL	A0A0K9NJ47	1e-162	A0A0K9NJ47_ZOSMR; Uncharacterized protein
STRING	XP_004172495.1	2e-71	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP294	38	260

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26780.1	4e-67	myb domain protein 117

Link Out ? help Back to Top
Phytozome	Zosma91g00550.1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]