PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma91g00600.1
Common NameZOSMA_91G00600
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family MYB
Protein Properties Length: 260aa    MW: 28790.6 Da    PI: 8.4786
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma91g00600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.52e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Zosma91g00600.1 14 KGPWMPEEDIILVSYIQEHGSGNWRAVPTNTGLMRCSKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding52.61.1e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T+eE++l++++  +lG++ W++Ia++++  Rt++++k++w+++l
  Zosma91g00600.1  67 RGNFTEEEEKLIIHLQVLLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.063961IPR017930Myb domain
SuperFamilySSF466896.74E-2911108IPR009057Homeodomain-like
SMARTSM007171.3E-101363IPR001005SANT/Myb domain
PfamPF002492.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-231568IPR009057Homeodomain-like
CDDcd001671.35E-81661No hitNo description
PROSITE profilePS5129425.42162116IPR017930Myb domain
SMARTSM007171.2E-1666114IPR001005SANT/Myb domain
PfamPF002491.4E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2469115IPR009057Homeodomain-like
CDDcd001671.44E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRPPCCEKV GVKKGPWMPE EDIILVSYIQ EHGSGNWRAV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TEEEEKLIIH LQVLLGNRWA AIASYLPERT DNDIKNYWNT HLKKKQSNGA  120
GEELLLSKGK WERRLQTDVN MAKKALSDAL SVDHQNPRTK TMITKSAPSC SSSAAGYALS  180
TENISRLLKN WMNNSPNKTG GSASTTNSSS VTEVSSSCSV TNHGDNKLIV DDPTSLSMLE  240
TWLLDESSCV QTELADIFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-25141157107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010939500.11e-107myb-related protein 306
SwissprotP813921e-99MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A0K9NJ510.0A0A0K9NJ51_ZOSMR; Myb domain protein 94
STRINGGorai.007G037100.11e-105(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.14e-94myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]