PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma91g00670.1

Common Name

ZOSMA_91G00670

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

HD-ZIP

Protein Properties

Length: 304aa MW: 34728.6 Da PI: 4.9768

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma91g00670.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.9	7.3e-18	96	149	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Zosma91g00670.1 96 KKRRLNMDQVRTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 149 4568999**********************************************9 PP
2	HD-ZIP_I/II	128.4	3e-41	95	187	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ +qv++LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lk++++a++++n+ L++++++L+e++++ Zosma91g00670.1 95 EKKRRLNMDQVRTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKQFEAVQSQNDDLHAHNKRLQEQIMS 187 69***************************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	6.42E-19	89	153	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.941	91	151	IPR001356	Homeobox domain
SMART	SM00389	1.5E-17	94	155	IPR001356	Homeobox domain
Pfam	PF00046	3.1E-15	96	149	IPR001356	Homeobox domain
CDD	cd00086	2.07E-15	96	152	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.0E-19	98	159	IPR009057	Homeodomain-like
PRINTS	PR00031	1.2E-5	122	131	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	126	149	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.2E-5	131	147	IPR000047	Helix-turn-helix motif
Pfam	PF02183	3.5E-14	151	191	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MMGSSSFFPP SPQPSSTSFF MQIQPLGEEE ELQNNSNGQN LFSSASLTHL QDYHGMASLL 60 GKRSMSLHSG MDKHAFEEMN GGEDEFSDDC SQLGEKKRRL NMDQVRTLEK NFELGNKLEP 120 ERKMQLARAL GLQPRQIAIW FQNRRARWKT KQLEKDYDVL KKQFEAVQSQ NDDLHAHNKR 180 LQEQIMSLNG REIAPEQPQT QTIINLNKET EVSCSYRTDN NKNTDIRIPP PNNEDLMNNP 240 SDQSMSFFPI INPHLLQCPK LESNDGANVG SGGDDSFCNN MFCNLDDQAP SFWTSWQEQQ 300 TFR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	RRARWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269\|PubMed:11292072}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008797128.1	3e-90	homeobox-leucine zipper protein HOX21
Swissprot	Q8LC03	2e-76	ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBL	A0A0K9NJ52	0.0	A0A0K9NJ52_ZOSMR; Homeobox-leucine zipper protein HOX21
STRING	XP_008797128.1	1e-89	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2289	38	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-78	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	Zosma91g00670.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ribone PA,Capella M,Chan RL Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development. J. Exp. Bot., 2015. 66(19): p. 5929-43 [PMID:26136262] Wang X, et al. Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana. Sci China Life Sci, 2018. 61(1): p. 79-87 [PMID:28887625] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]