PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma92g00460.1

Common Name

ZOSMA_92G00460

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

Nin-like

Protein Properties

Length: 254aa MW: 29258.5 Da PI: 5.0604

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma92g00460.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.3	3e-28	116	165	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++ed+s+yF++pi++AAk+L+v+lT+LK++CR++GI+RWPhRk+ksl Zosma92g00460.1 116 SNLTFEDVSRYFYMPITQAAKQLNVGLTLLKKRCRELGIPRWPHRKMKSL 165 69**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.553	98	187	IPR003035	RWP-RK domain
Pfam	PF02042	3.2E-23	117	165	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MEENNPVIGD YIFDSIFAGV IGLQSSTAPI WDWQNDYYTG EPQIVLPFAT TQLGTFSPDC 60 SFLPYRYRDL FLLPDDILPS MFDTDHTEVI AKVEDISPIK RTVERTMTEN QEKSLSNLTF 120 EDVSRYFYMP ITQAAKQLNV GLTLLKKRCR ELGIPRWPHR KMKSLQTLID NVQELGMENG 180 IAGECQLRCA LQILKEEKKM IEKKPEIQLE EKTKRLRQAY FKANYKKRRL LCIDSAPATT 240 DDDDNNSFIN IIT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020255496.1	5e-58	protein RKD1-like isoform X2
TrEMBL	A0A0K9NL52	0.0	A0A0K9NL52_ZOSMR; Protein RKD2

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-37	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Zosma92g00460.1