PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma92g00610.1
Common NameZOSMA_92G00610
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family B3
Protein Properties Length: 504aa    MW: 57445.8 Da    PI: 8.2048
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma92g00610.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.22.9e-13261061499
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      + l++p  f+++++ +  +    +l+ +sg +++v l   +  +++  ++GWk+F ++n +   Df++F+++g+++f   v+vf++
  Zosma92g00610.1  26 DKLTIPPAFITQIDCVRSN-SLASLKGPSGVTMTVDL--VRDANGMCSSNGWKSFIEDNCISIHDFLLFRYEGNMSF--AVSVFDT 106
                      5689*********877544.499**************..999999999*****************************..9999987 PP
2B339.79e-13256339998
                      HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +v +   + +p  f+++h   k++  +++l d+++ +W+vk+    ++g+  ++++W +F +an L+  D+++F+l++ ++f  +v++fr
  Zosma92g00610.1 256 YVYRGFYMNIPVAFIRDHLPAKTC--DIILCDPKNIEWTVKFVCYMGRGG--FSANWGSFSQANYLELHDVCMFELIQPNKF--RVHIFR 339
                      677778899*********644445..8***************66666666..899**********************98888..999998 PP
3B337.44.5e-124214863296
                      --SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  32 esktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      e++ +tl d++  sW+++l+     + ++   t+GW +F ++n+L+ gD++ F+l++ ++ ++ +++
  Zosma92g00610.1 421 EKTSVTLVDLKQHSWKINLRQyhLSSNKSLRSTGGWLQFIRDNELEIGDVCSFELKK-KDISPIFTI 486
                      3357***************65564444558899*********************986.666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.6E-188109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1810109IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.51813107IPR003340B3 DNA binding domain
CDDcd100171.22E-914105No hitNo description
SMARTSM010191.7E-816107IPR003340B3 DNA binding domain
PfamPF023625.4E-1026106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-21240339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-22241339IPR015300DNA-binding pseudobarrel domain
CDDcd100174.51E-19246339No hitNo description
PROSITE profilePS5086311.265248341IPR003340B3 DNA binding domain
SMARTSM010193.1E-10248341IPR003340B3 DNA binding domain
PfamPF023623.7E-11251339IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-15385484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-17385495IPR015300DNA-binding pseudobarrel domain
CDDcd100174.99E-13389487No hitNo description
SMARTSM010190.0037390490IPR003340B3 DNA binding domain
PROSITE profilePS5086312.041392490IPR003340B3 DNA binding domain
PfamPF023627.9E-10408487IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MTIGNRMPSD EQNKHFFKII FPETIDKLTI PPAFITQIDC VRSNSLASLK GPSGVTMTVD  60
LVRDANGMCS SNGWKSFIED NCISIHDFLL FRYEGNMSFA VSVFDTTGCE KKYDFTSLAR  120
RMAVDDNQGG LAVGNGLASA LDFSNEIHQH EEIVVKQEEV DYPSVLSHTD HPQTPSQIVK  180
GQSILKLPKI SMKASRNQHW NSSNKTRGKF MIKVRKLSVV SNRREVTDDE VKNAYDKAIS  240
FTSKNPTMMV VMRECYVYRG FYMNIPVAFI RDHLPAKTCD IILCDPKNIE WTVKFVCYMG  300
RGGFSANWGS FSQANYLELH DVCMFELIQP NKFRVHIFRV VEELTLSSQV RNDVDDSVSL  360
PDFEGKLDAT EGNGNNMVLS PTPMKLKNPY FVITIKKYNI SSSQPYWRIP TTFELFDYLM  420
EKTSVTLVDL KQHSWKINLR QYHLSSNKSL RSTGGWLQFI RDNELEIGDV CSFELKKKDI  480
SPIFTIIVHK SRRDSCNMSP PLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1421834219144B3 domain-containing transcription factor VRN1
4i1k_B3e-1421834219144B3 domain-containing transcription factor VRN1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NJB00.0A0A0K9NJB0_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44613766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-30B3 family protein