PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma93g00240.1

Common Name

ZOSMA_93G00240

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

LBD

Protein Properties

Length: 204aa MW: 22511.2 Da PI: 5.9598

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma93g00240.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	121.8	3.8e-38	13	110	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC ++Cv+apyf ++q + +f vhk+FGasnv+kll ++p ++r++a++++ +eA+ar+rdPvyG+v+ i++lq+q+++l++e Zosma93g00240.1 13 SCGACKFLRRKCMEGCVFAPYFSHDQgALHFSSVHKVFGASNVSKLLLHIPLHRRSEAAATISFEAQARMRDPVYGCVAYIFSLQRQVARLQQE 106 6***********************889*************************************************************** PP DUF260 94 lall 97 +++l Zosma93g00240.1 107 IDSL 110 9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.724	12	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-36	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MAGELGMVVV PSSCGACKFL RRKCMEGCVF APYFSHDQGA LHFSSVHKVF GASNVSKLLL 60 HIPLHRRSEA AATISFEAQA RMRDPVYGCV AYIFSLQRQV ARLQQEIDSL TMNPSTYNNT 120 NIWNNGGVSE FTPNQHGYYV NFSSSNSDAT LAVDRSTQPD HEDDHPAELH PLFREAIDRL 180 EHNLFSDIVE DDPPAVGMYG CVG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-37	12	109	10	106	LOB family transfactor Ramosa2.1
5ly0_B	1e-37	12	109	10	106	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615, ECO:0000269\|PubMed:21806801}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269\|PubMed:15829602, ECO:0000269\|PubMed:15960615}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017219707.1	1e-50	PREDICTED: LOB domain-containing protein 29-like
Refseq	XP_021910245.1	1e-50	LOB domain-containing protein 33-like
Swissprot	Q5UG13	2e-49	LBD_ORYSJ; LOB domain-containing protein CRL1
TrEMBL	A0A0K9NKR4	1e-152	A0A0K9NKR4_ZOSMR; Putative LOB domain-containing protein
STRING	evm.model.supercontig_1.438	4e-50	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2501	38	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	6e-49	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	Zosma93g00240.1

Publications ? help Back to Top
Coudert Y,Périn C,Courtois B,Khong NG,Gantet P Genetic control of root development in rice, the model cereal. Trends Plant Sci., 2010. 15(4): p. 219-26 [PMID:20153971] Kitomi Y, et al. The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] Coudert Y, et al. Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice. BMC Genomics, 2011. 12: p. 387 [PMID:21806801]