PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma93g00840.1
Common NameZOSMA_93G00840
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 149aa    MW: 16092.3 Da    PI: 9.6406
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma93g00840.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00121638123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C+ C++ Fs+   L  H  +H
  Zosma93g00840.1 16 FECKTCSRQFSSFQALGGHRASH 38
                     89**********99999998887 PP
2zf-C2H211.40.000986284123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C  Cg +Fs    L  H+r+H
  Zosma93g00840.1 62 HTCYVCGHMFSLGQALGGHMRRH 84
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.21E-61584No hitNo description
PfamPF139128.1E-121538IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0971643IPR007087Zinc finger, C2H2
SMARTSM003550.421638IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
PfamPF139121.8E-66186IPR007087Zinc finger, C2H2
PROSITE profilePS501579.6816289IPR007087Zinc finger, C2H2
SMARTSM003553.86284IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806484IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
METLVGKSPI TTAHVFECKT CSRQFSSFQA LGGHRASHGK PKLLNDYHVS ILNPNRKPAK  60
THTCYVCGHM FSLGQALGGH MRRHRGVSKK DHHEHMEKKN HGGGGGGGGG YHHNRTMSLD  120
LNMAPPVAME NDSEVGLLSF TLGLPQPC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239776.12e-31zinc finger protein ZAT11-like
TrEMBLA0A0K9NKZ51e-105A0A0K9NKZ5_ZOSMR; Putative Zinc finger protein
STRINGSolyc05g054650.1.19e-31(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.18e-25C2H2 family protein