PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma94g00020.1

Common Name

ZOSMA_118G00150, ZOSMA_94G00020

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

C2H2

Protein Properties

Length: 177aa MW: 19787.8 Da PI: 10.0019

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma94g00020.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00014	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs L H+r+H Zosma94g00020.1 91 HVCNICGIEFSVGQALGCHMRRH 113 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.55E-8	39	113	No hit	No description
Pfam	PF13912	3.9E-9	39	62	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.05	40	62	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.91	40	62	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.3E-6	90	115	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.764	91	118	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.51	91	113	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	93	113	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MHNNTLTPRT AMDKVYRQNY HDEKEKQKLI SIFKSSVETF RCKTCGKWFP SFQALGGHRT 60 VHNRPPCKTK RDLQLVMPVS VKSKKMKIAV HVCNICGIEF SVGQALGCHM RRHSKNQKNI 120 IDVGKVVTED NVVVDNSSSD NGLCLELRLS PPDLDVGLLK FSRGSLGFNL NSTNSD*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NIM1	1e-128	A0A0K9NIM1_ZOSMR; Zinc finger protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP501	37	157

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	4e-18	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Zosma94g00020.1