PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma95g00160.1
Common NameZOSMA_95G00160
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family FAR1
Protein Properties Length: 113aa    MW: 12913.5 Da    PI: 10.896
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma95g00160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR150.38.2e-161861090
             FAR1 10 vGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                     +GF vr  +++++    + +++ ++r++ Cske   +  +  +  +rr++a++r+gC a++k+k+e  +++w v++++leHnH+l+
  Zosma95g00160.1  1 MGFFVRLGSTNYKtskdDGKKNLVMRRLLCSKEKIVDLLHPPKLGKRRKNAVSRCGCCASIKIKREAmSEVWIVKNIVLEHNHPLT 86
                     6898888765554454344567899**********9999888899**********************9****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.1E-13186IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MGFFVRLGST NYKTSKDDGK KNLVMRRLLC SKEKIVDLLH PPKLGKRRKN AVSRCGCCAS  60
IKIKREAMSE VWIVKNIVLE HNHPLTTPSK LRFLPINRSI YILYLQITFP IS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14147PKLGKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NK091e-76A0A0K9NK09_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1424494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.13e-10FAR1-related sequence 11