PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma95g00240.1

Common Name

ZOSMA_95G00240

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

NF-YA

Protein Properties

Length: 225aa MW: 24472 Da PI: 7.7765

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma95g00240.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	104.2	1.1e-32	106	162	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +k+rkpylheSRh hAl+R+Rg+gGrF Zosma95g00240.1 106 EEPVYVNAKQYRGILRRRQSRAKAESENKL-IKNRKPYLHESRHLHALKRARGCGGRF 162 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.7E-36	104	165	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	36.706	105	165	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.4E-27	107	162	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.1E-22	108	130	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	110	130	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.1E-22	139	162	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MTSSHSSSSH SDECGDEQQN NSQLNVQPQL STGNIPLGME PLAAQFIVPH GQLEMDPNAV 60 QATAAYPFVD PYYGGILAAY HDGKTIVHPY YAGIQPGLPL PSDAIEEPVY VNAKQYRGIL 120 RRRQSRAKAE SENKLIKNRK PYLHESRHLH ALKRARGCGG RFLTAKDVNK KNSDAEFQAP 180 PSSNESLRQD SEENTTSAHN AQSSAGPSTN GFYLNNGMKA GNSH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	7e-21	105	169	1	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020268973.1	4e-61	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268974.1	4e-61	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268975.1	4e-61	nuclear transcription factor Y subunit A-7 isoform X1
Refseq	XP_020268976.1	4e-61	nuclear transcription factor Y subunit A-7 isoform X1
Swissprot	Q84JP1	5e-44	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A0K9NKD0	1e-166	A0A0K9NKD0_ZOSMR; Nuclear transcription factor Y subunit A-4
STRING	XP_008794453.1	2e-56	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6555	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	4e-46	nuclear factor Y, subunit A7

Link Out ? help Back to Top
Phytozome	Zosma95g00240.1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]