PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma95g00360.1
Common NameZOSMA_95G00360
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 231aa    MW: 25803.6 Da    PI: 10.4107
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma95g00360.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-134692354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     ++h e+ErrRR+riNs +++Lr+l+P+       K++Ka+ L ++v  +k+L
  Zosma95g00360.1 46 KNHCEAERRRRERINSHLSTLRDLVPTT-----SKMDKAALLAQVVTTVKEL 92
                     68*************************7.....6************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.3644392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.64E-1446102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-114692IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-1447102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-114998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.925126212IPR002912ACT domain
CDDcd048733.10E-8128200No hitNo description
SuperFamilySSF550216.64E-6128207No hitNo description
Gene3DG3DSA:3.30.70.2601.2E-6128196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MDSSTLPFGG RFVGSSSNYN LVLDTVERGK LVNVVKPETK ASMATKNHCE AERRRRERIN  60
SHLSTLRDLV PTTSKMDKAA LLAQVVTTVK ELKNNASQTS QKILLPSDVD QVAVKDYVDH  120
RGIFIKASIC CQDRPELLSD LKKIIRSLHL HITSSNISFL RGRVKNEFVV ACEENTSDSN  180
NIDKKTQLRN SLRKALEDLL ARISYQVEFS PRTLLAGGKR RRSSSLYSLS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NI391e-167A0A0K9NI39_ZOSMR; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-32bHLH family protein