PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zosma96g00070.1

Common Name

ZOSMA_96G00070

Organism

Zostera marina

Taxonomic ID

29655

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera

Family

FAR1

Protein Properties

Length: 193aa MW: 21484.2 Da PI: 10.435

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zosma96g00070.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.9	7.1e-18	81	173	3	90
FAR1 3 YneYAkevGFsvrkskskks....krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 Y ++A+++GFsvr ++k+ + ++ +++++ Csk+g+++ ++ +rr+++++r+gC a++k k+ + ++kw+ ++++++HnH+++ Zosma96g00070.1 81 YYDFASDMGFSVRLGSTKNIldkeSGQKILVMKRLLCSKQGSPSLILPPSDGTRRKNVVSRCGCMASIKFKRIDrSDKWVTDTVNHDHNHPFT 173 999********9998776664355666789********99999999*****************99*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.3E-14	81	173	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MRESSADIRE SFADIRESSA NVATGTAKNP NNHFKQKSSS PGQNQTSPDH HRSSSTYRQS 60 NKPCPIVGQV FPSYKMALQS YYDFASDMGF SVRLGSTKNI LDKESGQKIL VMKRLLCSKQ 120 GSPSLILPPS DGTRRKNVVS RCGCMASIKF KRIDRSDKWV TDTVNHDHNH PFTTPSKIRY 180 LPINRSISET SN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0K9NHU8	1e-141	A0A0K9NHU8_ZOSMR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1424	4	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	4e-15	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Zosma96g00070.1