PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma97g00520.1
Common NameZOSMA_97G00520
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family HD-ZIP
Protein Properties Length: 220aa    MW: 25752 Da    PI: 6.3722
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma97g00520.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.2e-1757110457
                      -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                      +++++++q+  Le+ F+++++++  ++ +LA+++gL+ +qV vWFqN+Ra++k+
  Zosma97g00520.1  57 KRKLSEQQTMFLESKFKEDMKLDFGRKLHLASEMGLDPKQVAVWFQNKRARWKN 110
                      56899***********************************************95 PP
2HD-ZIP_I/II101.95.4e-3357146392
      HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                      kr+ls++q  +LE++F+e+ kL+  rK +la+e+gl+p+qvavWFqn+RAR+k+kq+E  y++Lk++++++  ++++Le++v +Lr++l 
  Zosma97g00520.1  57 KRKLSEQQTMFLESKFKEDMKLDFGRKLHLASEMGLDPKQVAVWFQNKRARWKNKQMEDRYAKLKSQHQEILFQKCHLESQVLALRQQLI 146
                      9*************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.71E-1751114IPR009057Homeodomain-like
PROSITE profilePS5007115.3751111IPR001356Homeobox domain
SMARTSM003892.4E-1553115IPR001356Homeobox domain
CDDcd000868.67E-1455112No hitNo description
PfamPF000461.0E-1457110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.6E-1761109IPR009057Homeodomain-like
PRINTSPR000318.2E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000318.2E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MTQPEDEVMV FLSSILNLDL DKEEDGGLNE KKMKRKRKKR KMKNVDDDDD DKLFKFKRKL  60
SEQQTMFLES KFKEDMKLDF GRKLHLASEM GLDPKQVAVW FQNKRARWKN KQMEDRYAKL  120
KSQHQEILFQ KCHLESQVLA LRQQLIETQA QVQAVYSDQV SNGSGSDGRG STTSPNTSFS  180
IDTPQNCQFF PIEEDQFVYN THDEHNFLDG GGMFDWYIF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13038KKMKRKRKK
23239MKRKRKKR
33438RKRKK
43440RKRKKRK
53441RKRKKRKM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotA2YN172e-35HOX14_ORYSI; Homeobox-leucine zipper protein HOX14
SwissprotQ7XI852e-35HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBLA0A0K9NI261e-161A0A0K9NI26_ZOSMR; Homeobox-leucine zipper protein ATHB-40
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66700.14e-31homeobox 53
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]