PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma97g00930.1
Common NameZOSMA_97G00930
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 258aa    MW: 28238.5 Da    PI: 9.8303
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma97g00930.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-1364113354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++h e+ErrRR+riNs +++Lr l+P+ +   +  K++Ka+ L +++  +k+L
  Zosma97g00930.1  64 KSHCEAERRRRERINSHLSTLRGLVPTtS---KVSKMDKATLLAQVIMQVKEL 113
                      58*************************66...*************99877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.25661113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-1164113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1465124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-1365124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-1167119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.50E-5152220No hitNo description
Gene3DG3DSA:3.30.70.2603.3E-6152226No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MNRSFEIEMS ALQFGDCMVF RGGFGGGGAT GFVGSSSNSS MKATNNAAAG DVLGPEMKAA  60
MAMKSHCEAE RRRRERINSH LSTLRGLVPT TSKVSKMDKA TLLAQVIMQV KELKNNASQI  120
SQKTHLPSDT DEVTVEAFID EMNPREILIK ASICCKDRPE LLSDLKKIIR SLRLKIMSSE  180
IAFLEGRVKN EFVVACEGNT NCPNMEKNKN KLSISLQKAL ESILDRISAQ AEFSPRTLLA  240
GGKRRRSPFE SSPYSLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974ERRRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K9NHT70.0A0A0K9NHT7_ZOSMR; Basic helix-loop-helix (BHLH) DNA-binding superfamily
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110112938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.17e-36bHLH family protein