PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma98g00410.1
Common NameZOSMA_98G00410
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family NF-YC
Protein Properties Length: 160aa    MW: 17962.4 Da    PI: 6.0361
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma98g00410.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC43.95.1e-1415106999
            NF-YC   9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprd 99 
                      + e+++++   ++P  r+k+i+k d +++++++ea  l+s + +lf+  l+ r+ + + ++kr+t++   + +av t+t + dfl+d  p d
  Zosma98g00410.1  15 DQEQEEEVLAPSFPSGRVKRIIKLDGEINKLTSEAVHLISLSVDLFLGFLAERAKNVTVQKKRKTINLEYLRSAVsTHTPTSDFLLDCLPGD 106
                      57899999999************************************************************999835789*******99977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471134.04E-1422102IPR009072Histone-fold
PfamPF008082.3E-142689IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.102.3E-1627104IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MEEVDERRRE EADQDQEQEE EVLAPSFPSG RVKRIIKLDG EINKLTSEAV HLISLSVDLF  60
LGFLAERAKN VTVQKKRKTI NLEYLRSAVS THTPTSDFLL DCLPGDHHVL DRTEKTKKPK  120
TFHEEKPLPR GVQRIDGFFK KTPVAVAATA AVTVDLDAE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020250125.16e-42dr1-associated corepressor homolog
TrEMBLA0A0K9NHH61e-111A0A0K9NHH6_ZOSMR; Nuclear factor Y, subunit C13
STRINGXP_006403274.11e-36(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-34nuclear factor Y, subunit C13