PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma98g00510.1
Common NameZOSMA_98G00510
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 219aa    MW: 24272.2 Da    PI: 7.9021
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma98g00510.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1758108155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s y+GVr +  +grWv+eIr+p++   + r++lg++ tae+Aa+a++ a + ++g
  Zosma98g00510.1  58 STYHGVRMRN-WGRWVSEIREPKK---KSRIWLGTYPTAEMAARAHDVAELTIKG 108
                      569****998.**********854...6********************9988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-2858119No hitNo description
SuperFamilySSF541714.9E-1958118IPR016177DNA-binding domain
PROSITE profilePS5103222.23459117IPR001471AP2/ERF domain
SMARTSM003801.1E-2959123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-2959118IPR001471AP2/ERF domain
PfamPF008472.6E-1160107IPR001471AP2/ERF domain
PRINTSPR003672.2E-96071IPR001471AP2/ERF domain
PRINTSPR003672.2E-98298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MEESYENPVT PSYSSSSSSS CVIATLTSSN STTLTKISKR DKCPTSRKRQ HYDNNHASTY  60
HGVRMRNWGR WVSEIREPKK KSRIWLGTYP TAEMAARAHD VAELTIKGKA AANLNFPEHV  120
VKFPRPTSSS PKDIQIAAAK AATSAFSDTH MTLPTSVSTK DNDEEKKLFD LPDLFLGLDD  180
SSMCCYSSLW TNSLEDCGGG DVRFRPDDPF LWPGNQLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-13581171372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400894.16e-49PREDICTED: ethylene-responsive transcription factor ERF039-like
SwissprotQ8LBQ78e-44ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A0K9NHI61e-162A0A0K9NHI6_ZOSMR; Ethylene-responsive transcription factor 1
STRINGVIT_15s0021g02110.t011e-46(Vitis vinifera)
STRINGGSMUA_Achr5P15330_0018e-47(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]