PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma99g00580.1
Common NameZOSMA_99G00580
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family C2H2
Protein Properties Length: 105aa    MW: 12593.7 Da    PI: 10.428
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma99g00580.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.3e-051739323
                     ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                     C+   Cgk+Fs + + +rH+ +H
  Zosma99g00580.1 17 CTyeGCGKRFSKHRYVVRHQCVH 39
                     77779***************998 PP
2zf-C2H212.50.0004675101123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt..H 23 
                      ykC+   C  +F+  s++ rH r+  H
  Zosma99g00580.1  75 YKCKvsGCELTFRFVSDFSRHRRKtgH 101
                      9**********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.85E-7352No hitNo description
Gene3DG3DSA:3.30.160.603.2E-71339IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.4481544IPR007087Zinc finger, C2H2
SMARTSM003553.61539IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801739IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-114369IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00634569IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.8434574IPR007087Zinc finger, C2H2
PROSITE patternPS0002804769IPR007087Zinc finger, C2H2
SuperFamilySSF576672.64E-115597No hitNo description
Gene3DG3DSA:3.30.160.602.8E-117098IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.8575104IPR007087Zinc finger, C2H2
SMARTSM003550.5675101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028077101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0003676Molecular Functionnucleic acid binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MRFVTKEELC LHKRNICTYE GCGKRFSKHR YVVRHQCVHI DDRPLKCSWK GCTMSFKWAW  60
ARTEHLRVHT GERPYKCKVS GCELTFRFVS DFSRHRRKTG HYVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A5e-49110432135Lysine-specific demethylase REF6
6a58_A5e-49110432135Lysine-specific demethylase REF6
6a59_A5e-49110432135Lysine-specific demethylase REF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtHistone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1. {ECO:0000269|PubMed:24759811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093944.11e-59lysine-specific demethylase SE14
SwissprotQ10RP44e-48SE14_ORYSJ; Lysine-specific demethylase SE14
TrEMBLA0A0K9NJ881e-70A0A0K9NJ88_ZOSMR; Uncharacterized protein
STRINGXP_008775348.14e-58(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114913241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.18e-50C2H2 family protein