PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma99g00770.1
Common NameZOSMA_99G00770
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 187aa    MW: 21457.2 Da    PI: 9.2219
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma99g00770.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.44.2e-092068155
              AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     s++kGV   + +grW ++I++      + r++lg+ g + eAa+ ++ a  +++g
  Zosma99g00770.1 20 SRFKGVVPQP-NGRWGSQIYEK-----HNRVWLGTSGLEVEAARVYDIAVIRFRG 68
                     689***9788.8*********3.....5**********99**********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.05E-232076No hitNo description
SuperFamilySSF541712.81E-122076IPR016177DNA-binding domain
SMARTSM003805.8E-242182IPR001471AP2/ERF domain
PROSITE profilePS5103217.2532176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-152176IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.1E-11130180IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-8134181IPR015300DNA-binding pseudobarrel domain
CDDcd100173.83E-7134183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MYSHQVSSSL VVDKKQLPSS RFKGVVPQPN GRWGSQIYEK HNRVWLGTSG LEVEAARVYD  60
IAVIRFRGKD AVTNFEPLSN HSDEQTFLNS HSKYRIVEML QNHTYYDELH RHQNRLRKIS  120
LTSEEYSLPV AREHLFDKVI TSSDVGKLNR LVIPKQYAEK YFPVNVEKTT SSCDNVQMMN  180
LEGVGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020229690.11e-63AP2/ERF and B3 domain-containing transcription factor RAV1
SwissprotQ6L4H42e-57Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A0K9NHB81e-137A0A0K9NHB8_ZOSMR; Uncharacterized protein
STRINGXP_008446558.13e-61(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-57RAV family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]