PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma9g00810.1
Common NameZOSMA_9G00810
Organism
Zostera marina
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family ERF
Protein Properties Length: 261aa    MW: 29045.7 Da    PI: 9.9447
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma9g00810.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-1957106154
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                     ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAaka+++a+  + 
  Zosma9g00810.1  57 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAAKAYDEAAVIMS 106
                     59*******9.**********8.....334*********************97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.27E-3257117No hitNo description
PfamPF008471.5E-1158102IPR001471AP2/ERF domain
SMARTSM003801.4E-3858121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-3258116IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2058116IPR016177DNA-binding domain
PROSITE profilePS5103221.57558115IPR001471AP2/ERF domain
PRINTSPR003673.0E-105970IPR001471AP2/ERF domain
PRINTSPR003673.0E-108197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MDLRNLLSFH RDRSSPPTDL EPSKARRRRY RSSTTCVSTG TAVDCPTDLH SMEQQAKKFR  60
GVRQRHWGSW VSEIRHPLLK RRVWLGTFET AEEAAKAYDE AAVIMSGRNA KTNFPVLEGH  120
SKVIHHNPLA PPPSKGLSAV LSQKLRRCYK TTSPSLTCLR LDAEKSHIGV WQKRAGSKSD  180
SNWVMKIEFG NSTTASSHRP QHASSSSAPM DGESSGINEE DKIALQMVEE LLNRNCTGTA  240
PSIQLDGHRD KEPSICTTWT *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1557116161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-1555116264ATERF1
3gcc_A2e-1555116264ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008804592.11e-81ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI331e-67WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0K9NH690.0A0A0K9NH69_ZOSMR; Ethylene-responsive transcription factor 1A
STRINGXP_008804592.15e-81(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115732835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-56ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]