PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00001.1.g00200.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

FAR1

Protein Properties

Length: 510aa MW: 57098.6 Da PI: 5.703

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00001.1.g00200.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62	1.7e-19	263	367	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.................tekerrtraetrtgCkak 65 Y++YA+++GF+ ++++ ++ +g +++tf+C+ gk++ + +++++r+ a ++tgCka+ Zpz_sc00001.1.g00200.1.am.mk 263 LYKAYAYRTGFHAVRRTCHNY--EGLRYRSTFTCTYGGKPRAGAAScdspatryplrskreaaAQEKSRRGAAEKTGCKAM 341 6*********999998887..7888**********9999999*********9989999999****** PP FAR1 66 lkvkkek.dgkwevtkleleHnHela 90 l ++ ++ d+kw+v++l+leHnH+++ Zpz_sc00001.1.g00200.1.am.mk 342 LIIRDKRvDDKWKVESLDLEHNHPCT 367 *999*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-17	263	367	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence Send to blast
MRKPRKKFER LDRDCGEEAT IRNWEVVTLL CFSAFTKILY EHGNSHSRTN NPNGPACRPP 60 GYADLPHPPG AAAPSSSQAQ ILSSPSNKLP SSSLHPHTSA PFLHPQKNSL LFPGDVPTPV 120 ALAQIGTPCT ATRSVRCPAP FPAPPYRFPR RTLAIPRREA GAESMGEGSE ERAAAAQNPS 180 LDDEDEEARR VKEEVAEDLN GDPAEEEDDE EEVIVEEDED EDEAAIDSDE GQGVDNFVPR 240 TLEEALVPRV GMVFDSVDEA FALYKAYAYR TGFHAVRRTC HNYEGLRYRS TFTCTYGGKP 300 RAGAASCDSP ATRYPLRSKR EAAAQEKSRR GAAEKTGCKA MLIIRDKRVD DKWKVESLDL 360 EHNHPCTPDM VRFLKAYREM PESAKKKAKI TDEMDEAVEK SLSEIAETRK FPTRSKRGAS 420 GGAGVGSQKF SRMESYAQRF REEDLVALKK FIETMQHGKP DFIHSWDLDQ ESRVKNFFWT 480 DSRAQTQYRY FGECADTATE VHPKPLEEGF

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence Send to blast

MRKPRKKFER LDRDCGEEAT IRNWEVVTLL CFSAFTKILY EHGNSHSRTN NPNGPACRPP  60
GYADLPHPPG AAAPSSSQAQ ILSSPSNKLP SSSLHPHTSA PFLHPQKNSL LFPGDVPTPV  120
ALAQIGTPCT ATRSVRCPAP FPAPPYRFPR RTLAIPRREA GAESMGEGSE ERAAAAQNPS  180
LDDEDEEARR VKEEVAEDLN GDPAEEEDDE EEVIVEEDED EDEAAIDSDE GQGVDNFVPR  240
TLEEALVPRV GMVFDSVDEA FALYKAYAYR TGFHAVRRTC HNYEGLRYRS TFTCTYGGKP  300
RAGAASCDSP ATRYPLRSKR EAAAQEKSRR GAAEKTGCKA MLIIRDKRVD DKWKVESLDL  360
EHNHPCTPDM VRFLKAYREM PESAKKKAKI TDEMDEAVEK SLSEIAETRK FPTRSKRGAS  420
GGAGVGSQKF SRMESYAQRF REEDLVALKK FIETMQHGKP DFIHSWDLDQ ESRVKNFFWT  480
DSRAQTQYRY FGECADTATE VHPKPLEEGF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00001.1.g00200.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797820.1	1e-177	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A2T7CEU4	1e-176	A0A2T7CEU4_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I5H8	1e-176	A0A2T8I5H8_9POAL; Uncharacterized protein
TrEMBL	A0A2T8I5H9	1e-176	A0A2T8I5H9_9POAL; Uncharacterized protein
STRING	Pavir.Ia03886.1.p	1e-168	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	4e-17	FAR1-related sequence 8