PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00001.1.g02480.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 261aa MW: 28058.6 Da PI: 7.1002

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00001.1.g02480.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	65.5	1.3e-20	53	102	1	50
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf +h++FGasn++kll+ Zpz_sc00001.1.g02480.1.am.mk 53 PCAACKILRRRCADGCVLAPYFPPTEPAKFTTAHRVFGASNIIKLLQVRT 102 7********************************************98644 PP
2	DUF260	51.6	2.8e-16	131	186	45	100
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 + ++lpe+ r da+ss+vyeAear+rdPvyG++g++ +lq+q ++lk++la++++ Zpz_sc00001.1.g02480.1.am.mk 131 VSQDLPESSRADAVSSMVYEAEARLRDPVYGCAGTVCRLQKQANELKVQLARAQAD 186 67899**********************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.731	52	187	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.9E-20	53	103	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.3E-14	131	184	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 261 aa Download sequence Send to blast
MDCSNASTGT TAEHSYRSES PPSLVSTSCS PPPPSLPAAQ LIGNVAPTVV MSPCAACKIL 60 RRRCADGCVL APYFPPTEPA KFTTAHRVFG ASNIIKLLQV RTVQSQASRA TRGHHNTYTH 120 GNVLTGAFVP VSQDLPESSR ADAVSSMVYE AEARLRDPVY GCAGTVCRLQ KQANELKVQL 180 ARAQADLLNA QAQHANLLAL VCVEVANRGD SQRQQQQPSP PLMEYGGSCS EVGNAGYQMF 240 YDDSDLLDSA TWPVHEARLW T

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-34	52	188	10	112	LOB family transfactor Ramosa2.1
5ly0_B	6e-34	52	188	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00001.1.g02480.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137074	4e-79	AC137074.2 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0022M22, from chromosome 3, complete sequence.
GenBank	AK072515	4e-79	AK072515.1 Oryza sativa Japonica Group cDNA clone:J023131K07, full insert sequence.
GenBank	AP014959	4e-79	AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBank	CP012611	4e-79	CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
GenBank	CT832143	4e-79	CT832143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN027J24, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004987050.2	1e-99	LOB domain-containing protein 1
TrEMBL	A0A368SSE3	2e-98	A0A368SSE3_SETIT; Uncharacterized protein
STRING	Pavir.Ib01336.1.p	1e-103	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-47	LOB domain-containing protein 1