PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00002.1.g01360.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 281aa    MW: 29932.2 Da    PI: 9.2037
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00002.1.g01360.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.79e-13140186455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    h ++Er+RR++i+++f eL  ++P++     +K++ a+iL +A+ Y+k+Lq
  Zpz_sc00002.1.g01360.1.am.mk 140 EHIMAERKRREKIRQRFVELSAVIPSL-----TKMDNATILYRATSYVKELQ 186
                                   599***********************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.526136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-15139204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16140203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-10140186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.05E-14141190No hitNo description
SMARTSM003532.2E-12142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEDMTEFMQW ATNALQQEHS APPVADCASP SVLLGVPEEQ RSIMGAPATN GWIPGGTTDG  60
SLVGHIAVPA APMVAPSTNM AGNAPTSSLV GGNTSASWSF GSATGRVLSE LAYRSQPTRT  120
ACLTNPWSSA SFAPPPYARE HIMAERKRRE KIRQRFVELS AVIPSLTKMD NATILYRATS  180
YVKELQERIK RREAAGSALS GSMDNIVPTP RHATPAGPTK PLPDVQAHFS GKSVMVRIQC  240
ENGKGVIVKV LKEVEEAHLS IVDANFMAAA TRGVGRVLLG S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149ERKRRE
2145150RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00002.1.g01360.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004984147.31e-53transcription factor bHLH18-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3328334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.13e-24bHLH family protein