PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00003.1.g00110.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 1085aa    MW: 117236 Da    PI: 9.8337
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00003.1.g00110.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.93e-17938997357
                                   --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                   +R+++ +eq+++Le l++   r+ps  ++e ++++l    +++ ++V++WFqN++a+e++
  Zpz_sc00003.1.g00110.1.am.mk 938 TRWNPCPEQIKVLEMLYRGgMRTPSSFQIECITEELgkygRIQGKNVFYWFQNHKARERQ 997
                                   8*****************99**************************************97 PP
2Wus_type_Homeobox107.86.6e-35937999365
             Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                   +tRW+P peQik+Le+ly+ G+rtP++ +i+ it+eL +yG+i++kNVfyWFQN+kaRerqkq
  Zpz_sc00003.1.g00110.1.am.mk 937 TTRWNPCPEQIKVLEMLYRGGMRTPSSFQIECITEELGKYGRIQGKNVFYWFQNHKARERQKQ 999
                                   79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520581.36E-27169339IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.102.0E-33169318IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF561122.49E-13486634IPR011009Protein kinase-like domain
Gene3DG3DSA:1.10.510.103.7E-10549657No hitNo description
PfamPF077142.3E-4551629IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
SMARTSM003895.2E-49351002IPR001356Homeobox domain
CDDcd000860.00216938999No hitNo description
PfamPF000466.3E-15938997IPR001356Homeobox domain
SuperFamilySSF466892.45E-109381003IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-5939997IPR009057Homeodomain-like
PROSITE profilePS500719.151945998IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0004672Molecular Functionprotein kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1085 aa     Download sequence    Send to blast
MFGSVSDAKL HVPPHVLPRP PADPSLRSRA NGHQRSSKPR QPPLQATPQC RTAAASPSSS  60
SCCYTSSPPP RLPAWPQQAP HRARSPRCGH PPRPWRRPRG SRXXXXXXXX XXHAVTPSAA  120
PAARPLHPRP TPVQAVAPAS SAPTAAAVIA SFLAKADPSS HLRVPPAASL CSQPGISCSA  180
AGQVTRLVLE SAGLNGTFAP ATLSRLAELR VLSLKSNALH GPVPDLSDLV NLKAIYLAGN  240
RFSGPFPVSL ASLGRLRSID LSGNRLSGAL PVGIEAVFPH LTFLRLDANH FNGSLPPWNQ  300
SELKVLNVSY NDFSGPVPVT PVMTQMGAAA FAGNPKLCGE VVRRECHLPF FHGDGSNSSA  360
APPVQSAAAS DGGPQREGFS TPDSSAPRSK RAKRRTTVAI AVARSNKRRR PRSVAYPSPK  420
KSAAASDVSM DNADIGYVEC VRDEETAAIM VPEEKARRLE RSGCLTFCAG EAASYSLEQL  480
MRASAEVLGR GSVGTTLVVI VKRLDAAKIG PAALEAETFE QNMDSVGRLR HPNLAKEERL  540
LVYDYQPNGS LYSLVHDIYA FGVLLIELLS GKPPLQHSVL VATNLPTYVQ SAREDEGVDR  600
DRISMIVDIA ATCIRSSPES RPTAWQVLKM IQEVKEADTT GDIGDNDTET QDEPCHAYAL  660
HWRPRPSDQQ VTLRTATIFP ARRGTSLQSW YRRCSVLRFR SMQRKCAAFR SPDALLLLLL  720
RRGVFPTRPP AVQHGACTPS RSSARRAGRP GASALALAIA FHFSELLASQ FTALYRDWHG  780
LSFANPTTQT HALIPVSGLI SPGKDQLLAH AWEHGEMGST SCKNVGVSPA ASAGASMACP  840
HSQPACRSIA AHESMQHAFR LLDKAASSSS PQSLITSSSS AIPALSLHQC LRPLAPKISF  900
PESRKKMVVL PEFTRVRNSA RLLNCTELQV QVPMAGTTRW NPCPEQIKVL EMLYRGGMRT  960
PSSFQIECIT EELGKYGRIQ GKNVFYWFQN HKARERQKQK RAALLTLSTT SSSLPAETKD  1020
GEEKKEVSEE DAASVSCKRR CKSWGDVHGV GDAATAEVAD DHCTNDDVTL ELFPLRPQGK  1080
ASYSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wls_A1e-1917534634207Pollen receptor-like kinase 3
5wls_B1e-1917534634207Pollen receptor-like kinase 3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392409KRRTTVAIAVARSNKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00003.1.g00110.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP538434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.11e-33WUSCHEL related homeobox 4