PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00011.1.g00280.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 447aa MW: 49269.3 Da PI: 8.8599

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00011.1.g00280.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	68.8	1.2e-21	77	141	2	64
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkk 64 F+ k+ye++ d++++ ++sw gn+fvv+d++e+a +Lp++Fkh nfaSFvRQLn+Y +k Zpz_sc00011.1.g00280.1.am.mk 77 FVAKTYEMVADPATDAVVSWApgGAGNAFVVWDPRELAAALLPRFFKHANFASFVRQLNIYVSQK 141 9******************55556*********************************7655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	1.7E-26	73	150	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.26E-20	73	150	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.7E-23	74	146	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.7E-18	77	147	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-13	77	100	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-13	117	129	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-13	130	142	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 447 aa Download sequence Send to blast
MRTLGPRQHQ HRHQHTRSHS PHTAPRLEEP LGKEAERAMA PPVVKREPKP EPWATEAAVS 60 AGAGAPRPVD AAPPAPFVAK TYEMVADPAT DAVVSWAPGG AGNAFVVWDP RELAAALLPR 120 FFKHANFASF VRQLNIYVSQ KHLLKNIKRR RPSKHYPDSQ PRTGSSVCLG DDIREVQSLK 180 RDRASLMAEL AMLKQRYSRC KSLLAAMEDR VRDNERKQQL IVAFFAKVLT NPAFLQQQLN 240 RLRNVELCGG AAKRQRLMAS EEQQQYQQHV GAPVVENGVV EAAAASAITE ADVSETGSSS 300 DGGVAAVKHE TMPEWNGVQS FDNICDDVWE ELGAIPGTEV EQEVIAAASF DVEEFPGKPC 360 GWVDDCPYLV DPMPRAVTEF GTGLKLIRRP TRPNSLWIWI PNRHCILAHI LLIAASGLRP 420 PPPPRLDGFF SPPRRAIAAA GVLLRRG

Sequence ? help Back to Top

Protein Sequence Length: 447 aa Download sequence Send to blast

MRTLGPRQHQ HRHQHTRSHS PHTAPRLEEP LGKEAERAMA PPVVKREPKP EPWATEAAVS  60
AGAGAPRPVD AAPPAPFVAK TYEMVADPAT DAVVSWAPGG AGNAFVVWDP RELAAALLPR  120
FFKHANFASF VRQLNIYVSQ KHLLKNIKRR RPSKHYPDSQ PRTGSSVCLG DDIREVQSLK  180
RDRASLMAEL AMLKQRYSRC KSLLAAMEDR VRDNERKQQL IVAFFAKVLT NPAFLQQQLN  240
RLRNVELCGG AAKRQRLMAS EEQQQYQQHV GAPVVENGVV EAAAASAITE ADVSETGSSS  300
DGGVAAVKHE TMPEWNGVQS FDNICDDVWE ELGAIPGTEV EQEVIAAASF DVEEFPGKPC  360
GWVDDCPYLV DPMPRAVTEF GTGLKLIRRP TRPNSLWIWI PNRHCILAHI LLIAASGLRP  420
PPPPRLDGFF SPPRRAIAAA GVLLRRG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-15	59	141	16	91	Heat shock factor protein 1
5d5v_B	2e-15	59	141	16	91	Heat shock factor protein 1
5d5v_D	2e-15	59	141	16	91	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	149	LKNIKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00011.1.g00280.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU968890	4e-56	EU968890.1 Zea mays clone 324753 hypothetical protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814071.1	1e-123	heat stress transcription factor A-6a-like
Swissprot	Q657C0	1e-110	HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBL	A0A2S3HUJ8	1e-121	A0A2S3HUJ8_9POAL; Uncharacterized protein
STRING	Pavir.Eb02487.1.p	1e-120	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP308	37	231

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	8e-42	heat shock transcription factor A2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]