PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00011.1.g00640.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 441aa    MW: 45799.9 Da    PI: 5.4933
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00011.1.g00640.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.31.2e-07337377954
                                   HHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   9 ErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                                    r+RR+ri +++  L++l+P  a      K++ a++L +A +Y++ L
  Zpz_sc00011.1.g00640.1.sm.mk 337 ARQRRERISERLRVLQKLVPGgA------KMDTASMLDEAANYLRFL 377
                                   69******************966......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.869328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.49E-13334387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-11334382No hitNo description
Gene3DG3DSA:4.10.280.104.5E-11336386IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.3E-5337377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDHSFSDLLL SNSAWSGAGD GGAVVLPTDL GSGGVSGVVD GSSMSVLERL VLDEALAAAI  60
LELQQQQQQG ITAAAPKMPA GGGGGGGVGD AVAFPSMSTL TFPYADDVDA DVLQRQQHRH  120
RHHAAMAMVA DYDLTPATAA VAAVTSALFT NAASAGDGGT LGDPRVLTGT ETAVTTAVSV  180
VVTTTTKSQQ CEEERDGGCF SGQKQRRTSR KRNAASSAPT QESSLCSLLA SSTAGDGGGI  240
QIAFSTSAQQ APGANKRSKP SLSSGSSSIS FDGRIAGAGG EDPVYEPDTE ALAQVKEMIY  300
RAAAMRPVSL GPELEEAGER PRRRNVRISS DPQTVAARQR RERISERLRV LQKLVPGGAK  360
MDTASMLDEA ANYLRFLKSQ VRELQTLDRR NYGNANANSS SAATMAEAPL SYNNGHGGVP  420
SFAFPATETL LEARGGVEQR I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337342RQRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00011.1.g00640.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0031411e-135AP003141.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0002B05.
GenBankAP0032961e-135AP003296.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0697C12.
GenBankAP0149571e-135AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126091e-135CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814680.11e-120transcription factor LATE FLOWERING-like
TrEMBLA0A3L6STE11e-130A0A3L6STE1_PANMI; Transcription factor bHLH87-like
STRINGOMERI01G17570.11e-120(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154637106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.13e-35bHLH family protein