PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00013.1.g00680.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 338aa    MW: 36895.8 Da    PI: 5.9949
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00013.1.g00680.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35e-12166213355
                                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     + h  +Er+RR+++ ++f  L +++P +     kK++Ka+ L  A++Y+k+Lq
  Zpz_sc00013.1.g00680.1.sm.mkhc 166 QDHILAERKRREKLSQRFIALSKIVPGL-----KKMDKASLLGDAIKYVKQLQ 213
                                     67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.593163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-17166232IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-10166213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-16167224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.83E-13168217No hitNo description
SMARTSM003533.3E-14169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MATQWFSNMV MDEPSFFHQW QSDALLEQYT EQQIAVAFGQ GEVDQAALAA LMPQRYDYAA  60
PAAAEHRQRK AARVNTPSWD SCITEQGSPA DSSSPTILSF GGHAAATAFS KADAQVPNAP  120
SYYGHSATAQ VKAPKQEVVD AEESYDAMVA AEAQAPVPSR PASQNQDHIL AERKRREKLS  180
QRFIALSKIV PGLKKMDKAS LLGDAIKYVK QLQEQIKGLE NEARRRPVEA AVLVKKSQLC  240
ADDDENFLGG GAGALPEIEA RVSDRTVLVK IHCESRKGAL ITALSEVERL GLTIMNTNVL  300
PFTSSFLDIT ILATIGDEFC LSVKDIVKKL NQAFKPSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-14167222863Transcription factor MYC2
5gnj_B5e-14167222863Transcription factor MYC2
5gnj_E5e-14167222863Transcription factor MYC2
5gnj_F5e-14167222863Transcription factor MYC2
5gnj_G5e-14167222863Transcription factor MYC2
5gnj_I5e-14167222863Transcription factor MYC2
5gnj_M5e-14167222863Transcription factor MYC2
5gnj_N5e-14167222863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176ERKRRE
2172177RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00013.1.g00680.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7268634e-84KJ726863.1 Zea mays clone pUT3404 bHLH transcription factor (bHLH137) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014661241.10.0transcription factor bHLH18
TrEMBLK4ABY60.0K4ABY6_SETIT; Uncharacterized protein
STRINGSi036393m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42133572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.16e-56bHLH family protein