PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00013.1.g01050.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 147aa    MW: 15968.2 Da    PI: 7.2346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00013.1.g01050.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.5e-0734731255
                                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                    RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Zpz_sc00013.1.g01050.1.sm.mkhc 34 RRKKISERMKLLQDLVPGC----HKITGKAVMLDEIINYVQSLQ 73
                                    9*****************9....899*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.282272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00133378IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-123485IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.86E-93477No hitNo description
PfamPF000101.2E-43473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-123582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MLGVGTALST SQVHSDARSS SSSESSIKFH GALRRKKISE RMKLLQDLVP GCHKITGKAV  60
MLDEIINYVQ SLQRQVEMML SQDRHIAFYG ADPGSISLGT IHNVSAVNQM PAMWEGLHMP  120
HMNFNPGVAA DSGGTNDADR TMIIESS
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00013.1.g01050.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3609593e-47AK360959.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1129G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131789.11e-49uncharacterized protein LOC100193160
RefseqXP_008647764.11e-49transcription factor bHLH62 isoform X1
RefseqXP_008647791.11e-49transcription factor bHLH62 isoform X1
RefseqXP_020395971.11e-49transcription factor bHLH62 isoform X1
RefseqXP_020396007.11e-49transcription factor bHLH62 isoform X1
TrEMBLA0A1D6L3041e-48A0A1D6L304_MAIZE; Transcription factor bHLH62
TrEMBLA0A1D6L3075e-49A0A1D6L307_MAIZE; Transcription factor bHLH62
STRINGPavir.Ia00718.1.p2e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60333650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.31e-23bHLH family protein