PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00014.1.g00510.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 204aa    MW: 22443.1 Da    PI: 6.8031
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00014.1.g00510.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-1955105256
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                                   +y+G+r+++ +g+W+AeIrdp+    +  r++lg++ tae Aa+a+++a+++++g+
  Zpz_sc00014.1.g00510.1.sm.mk  55 QYRGIRQRP-WGKWAAEIRDPV----KgVRVWLGTYPTAEAAARAYDRAARSIRGA 105
                                   6********.**********75....44*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-3255113IPR001471AP2/ERF domain
SMARTSM003801.4E-3655118IPR001471AP2/ERF domain
PROSITE profilePS5103224.2155112IPR001471AP2/ERF domain
SuperFamilySSF541714.84E-2255113IPR016177DNA-binding domain
CDDcd000181.11E-1855114No hitNo description
PfamPF008471.1E-1256104IPR001471AP2/ERF domain
PRINTSPR003673.8E-115667IPR001471AP2/ERF domain
PRINTSPR003673.8E-117894IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MCGGAIIYDY IPARRRVSSA DFWPDDSDES DHHHHHHTAE RAAARPKARR ERKNQYRGIR  60
QRPWGKWAAE IRDPVKGVRV WLGTYPTAEA AARAYDRAAR SIRGAKAKVN FPNDVAEPKA  120
APAAAAAPPA PAPKVEPSDE VKELSEELMA YENYMNFLGI PYMEGGNAAG PAAAAVEEPS  180
APAPVSGLWS FEDYYQPSLA LFTE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2155115566ATERF1
3gcc_A2e-2155115566ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00014.1.g00510.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353272e-74BT035327.1 Zea mays full-length cDNA clone ZM_BFb0055H11 mRNA, complete cds.
GenBankJX4699152e-74JX469915.1 Zea mays subsp. mays clone UT3171 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001131773.16e-81uncharacterized protein LOC100193143
TrEMBLB4FDY91e-79B4FDY9_MAIZE; Ethylene-responsive transcription factor RAP2-2
TrEMBLK4JRM41e-79K4JRM4_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G169382_P012e-80(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115472540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-29ERF family protein