PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00015.1.g00540.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 294aa MW: 31553.2 Da PI: 10.6702

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00015.1.g00540.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	91.6	6.9e-29	89	145	2	54
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ....kYR 54 pr+rWt+ LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ +YR Zpz_sc00015.1.g00540.1.sm.mk 89 PRMRWTTALHAHFVQAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQarapMYR 145 9*************************************************5555566 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.3E-14	85	140	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.8E-26	86	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-21	89	138	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-6	90	138	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MNSTTVTGAT PDLSLHISPP SPADGGGETP EPSSTLRLGL DTAAKTVVDA AQRGLLVQQR 60 LHQPSQTAHG FKKSSGAGAR GRKRCSRAPR MRWTTALHAH FVQAVELLGG HERATPKSVL 120 ELMNVKDLTL AHVKSHLQAR APMYRTVKST DRSCVAGHGQ AREMGFLMGR GDAPEMDGLF 180 DGFNCNVVNT TAMFSSNSST SRLLGPVLKE EAYMHIRVKK LECLMVPPSS LSTRPGRQWS 240 TSIIRIRTIS IVPLAPVAVL GPSSVAPVVM PVESQVRQPE RDKGDSSIGL DRPG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-15	90	148	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00015.1.g00540.1.sm.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020183178.1	5e-68	probable transcription factor KAN4
Swissprot	Q9FJV5	3e-34	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A0A9GQA6	6e-80	A0A0A9GQA6_ARUDO; Uncharacterized protein
STRING	Pavir.J09156.1.p	9e-69	(Panicum virgatum)
STRING	Traes_5DS_39E5EF501.2	7e-69	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3742	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	7e-38	G2-like family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]