PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00016.1.g00970.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 116aa    MW: 12632.2 Da    PI: 6.5015
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00016.1.g00970.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind79.26.5e-251479266
                                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTT.EEE-- CS
                  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYg.Fkkvk 66
                                  Fl+k+ye+++d++++ ++ w+  g+sfvv ++ ef +++L kyFkh+nf+SFvRQLn+Y  F++v+
  Zpz_sc00016.1.g00970.1.sm.mk 14 FLSKTYEMVDDPATDAVVAWTPPGTSFVVANQAEFCRDLLRKYFKHNNFSSFVRQLNTYHtFRQVN 79
                                  9**********************************************************5477765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.9E-27979IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.28E-23979IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.9E-261098IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-151437IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.5E-221479IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-155264IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-156577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MEGGGGGGSS LPPFLSKTYE MVDDPATDAV VAWTPPGTSF VVANQAEFCR DLLRKYFKHN  60
NFSSFVRQLN TYHTFRQVNP LCPDVSNQLD AMALGKLTQS NGSLQMRISL GDNGTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-224781992Heat shock factor protein 1
5d5v_B1e-224781992Heat shock factor protein 1
5d5v_D1e-224781992Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00016.1.g00970.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2034563e-93KT203456.1 Paspalum vaginatum clone SpCT4 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456359.11e-44heat stress transcription factor A-4b
RefseqXP_025816815.12e-44heat stress transcription factor A-4b isoform X1
RefseqXP_025816816.12e-44heat stress transcription factor A-4b isoform X2
SwissprotQ94J166e-37HFA4B_ORYSJ; Heat stress transcription factor A-4b
TrEMBLA0A1W0VZI61e-43A0A1W0VZI6_SORBI; Uncharacterized protein
STRINGSb03g034630.15e-44(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17750.12e-30heat shock factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Shim D, et al.
    Orthologs of the class A4 heat shock transcription factor HsfA4a confer cadmium tolerance in wheat and rice.
    Plant Cell, 2009. 21(12): p. 4031-43
    [PMID:20028842]
  3. Guan JC, et al.
    A 9 bp cis-element in the promoters of class I small heat shock protein genes on chromosome 3 in rice mediates L-azetidine-2-carboxylic acid and heat shock responses.
    J. Exp. Bot., 2010. 61(15): p. 4249-61
    [PMID:20643810]