PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00018.1.g00560.1.am.mkhc

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LSD

Protein Properties

Length: 131aa MW: 13639 Da PI: 8.5914

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00018.1.g00560.1.am.mkhc	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.4	1e-12	37	61	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCrt+L YP GApsV+Ca+C+++ Zpz_sc00018.1.g00560.1.am.mkhc 37 CRGCRTVLLYPQGAPSVCCAVCQAI 61 9**********************97 PP
2	zf-LSD1	23.4	1e-07	76	89	1	14
zf-LSD1 1 CggCrtlLsYPrGA 14 CggCrtlL+Y+r+A Zpz_sc00018.1.g00560.1.am.mkhc 76 CGGCRTLLMYTRNA 89 ************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	6.5E-12	34	64	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.5E-11	37	61	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	4.4E-7	73	89	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.5E-5	76	89	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MIDLLIGFGA GVPARTVRRR SGGVVAFASC MENQIVCRGC RTVLLYPQGA PSVCCAVCQA 60 ITTVPPPGLE MAQLICGGCR TLLMYTRNAD TPKTQPQNVT VVVENPMTVD EKGKLVSNVA 120 VGVTAGSAGK N

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00018.1.g00560.1.am.mkhc

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982348.1	3e-35	protein LOL3
TrEMBL	A0A0E0KGN6	3e-50	A0A0E0KGN6_ORYPU; Uncharacterized protein
STRING	OMERI03G23730.1	3e-37	(Oryza meridionalis)
STRING	OMERI12G13090.1	4e-37	(Oryza meridionalis)
STRING	ORUFI12G20660.2	4e-37	(Oryza rufipogon)
STRING	OPUNC12G16710.1	4e-37	(Oryza punctata)
STRING	Si037185m	5e-37	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	8e-27	lsd one like 1