PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00018.1.g00590.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 1051aa MW: 111579 Da PI: 9.7756

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00018.1.g00590.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.3e-05	772	797	25	55
CTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 25 ellPkaskapskKlsKaeiLekAveYIksLq 55 +l+P++ K +Ka++L +A+eY+ksLq Zpz_sc00018.1.g00590.1.am.mk 772 QLIPHC-----NKTDKASMLDEAIEYLKSLQ 797 688887.....6******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.489	747	796	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.009	759	802	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.90E-5	772	801	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-7	772	804	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.19E-8	772	812	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 1051 aa Download sequence Send to blast
MQPRERPLRH GLREGGDRGL LLLRERPPAT HRSSAGTRKR EVAATDLLPS RRKVVPLGDR 60 PRLGQRGRRP RRRRRHGRML YGRLTSGGGK LPERRVRCTT LRAIGLGAER TETWLAEDER 120 TPLVLPRRRG AVPIADGRMD HAGLGSRQNH ELNLAARSGL PKPRSDSSWP RSAVHQTPAK 180 VAREDATASR AMAGRPGSPT MASWCLGPMV GPLTLASVPP YSGSCDPRAA NKRDPERRLV 240 ALPGLACRLP VWGKGCATAT CAARPSSAFP QGDRRIEGKD VALIRRICFV ARPARISSCR 300 CLWRLERSLR PQAEQVATRR GRESGSIGTF MATSPTSAIH APSYNLVDAR RLPEMQVNPT 360 DARAAPRRVE IASVHAPPHL SDPDSGPLPL LPSLFLSPSL SRRLCLPESS SIQPTGRCRA 420 ALQLCLKATA KPSSFLLVLP CCCFCKAKDR FSSCPRTRSS CLEFTGANAS RAGILLRRED 480 DDLIELLWCN GHVVMQSQTN RKLPPPRPEK PGPLGSPPPP PPAAAVTPTA VQEDEAGLWF 540 SFSLADVLDK DIFSDFFSEA PPVAAPATAV EAGKPPCRDV PVPVPPREDG GTHGAVSDAP 600 RHLMPPPKST PHVSCSRQQT TNLGDDLSEL VPAGSGRKAA GTEAGASSST LSAIGSSICG 660 SNQVLVPLRA PATAACGGST LPSAVGSANA NASGRGHETT VASSSGRSSG CFGATTEPTS 720 TSNRSSKRKR LDTEDSESPS EDAESESTAA ERKPPPKLPT ARRSRAAEVH NQLIPHCNKT 780 DKASMLDEAI EYLKSLQLQV QMMWMGSGVT APPVMFPGVH QYLPRMGVGM GAAAAAAMPR 840 MPFMAPQLVN PVPLSPGYLG HMPAVGITEP YAHYLGTVNH LQPTLTQHFA QGVDYYPLGT 900 KAVQQNPALH VPGAGGSMTA AAPGVLPPES APNKGPGTTP SCSSLLVAVM LGPGLSPISH 960 NALLTIADSS TATAASCACR RAEEEAISSS FLLLCNVMCC DGWCIEWVAR GGQSANVAAT 1020 SMDELVRAVA IHACMLLLEQ GRVGVVSSER L

Sequence ? help Back to Top

Protein Sequence Length: 1051 aa Download sequence Send to blast

MQPRERPLRH GLREGGDRGL LLLRERPPAT HRSSAGTRKR EVAATDLLPS RRKVVPLGDR  60
PRLGQRGRRP RRRRRHGRML YGRLTSGGGK LPERRVRCTT LRAIGLGAER TETWLAEDER  120
TPLVLPRRRG AVPIADGRMD HAGLGSRQNH ELNLAARSGL PKPRSDSSWP RSAVHQTPAK  180
VAREDATASR AMAGRPGSPT MASWCLGPMV GPLTLASVPP YSGSCDPRAA NKRDPERRLV  240
ALPGLACRLP VWGKGCATAT CAARPSSAFP QGDRRIEGKD VALIRRICFV ARPARISSCR  300
CLWRLERSLR PQAEQVATRR GRESGSIGTF MATSPTSAIH APSYNLVDAR RLPEMQVNPT  360
DARAAPRRVE IASVHAPPHL SDPDSGPLPL LPSLFLSPSL SRRLCLPESS SIQPTGRCRA  420
ALQLCLKATA KPSSFLLVLP CCCFCKAKDR FSSCPRTRSS CLEFTGANAS RAGILLRRED  480
DDLIELLWCN GHVVMQSQTN RKLPPPRPEK PGPLGSPPPP PPAAAVTPTA VQEDEAGLWF  540
SFSLADVLDK DIFSDFFSEA PPVAAPATAV EAGKPPCRDV PVPVPPREDG GTHGAVSDAP  600
RHLMPPPKST PHVSCSRQQT TNLGDDLSEL VPAGSGRKAA GTEAGASSST LSAIGSSICG  660
SNQVLVPLRA PATAACGGST LPSAVGSANA NASGRGHETT VASSSGRSSG CFGATTEPTS  720
TSNRSSKRKR LDTEDSESPS EDAESESTAA ERKPPPKLPT ARRSRAAEVH NQLIPHCNKT  780
DKASMLDEAI EYLKSLQLQV QMMWMGSGVT APPVMFPGVH QYLPRMGVGM GAAAAAAMPR  840
MPFMAPQLVN PVPLSPGYLG HMPAVGITEP YAHYLGTVNH LQPTLTQHFA QGVDYYPLGT  900
KAVQQNPALH VPGAGGSMTA AAPGVLPPES APNKGPGTTP SCSSLLVAVM LGPGLSPISH  960
NALLTIADSS TATAASCACR RAEEEAISSS FLLLCNVMCC DGWCIEWVAR GGQSANVAAT  1020
SMDELVRAVA IHACMLLLEQ GRVGVVSSER L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	67	72	RRPRRR
2	67	74	RRPRRRRR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00018.1.g00590.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK060505	5e-60	AK060505.1 Oryza sativa Japonica Group cDNA clone:001-018-H11, full insert sequence.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3107	36	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59060.1	2e-19	phytochrome interacting factor 3-like 6