PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00020.1.g00060.1.sm.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LSD
Protein Properties Length: 87aa    MW: 9138.51 Da    PI: 7.342
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00020.1.g00060.1.sm.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.64.9e-14731125
                         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                                    C+gCr lL YPrGApsV+Ca+C++V
  Zpz_sc00020.1.g00060.1.sm.mkhc  7 CHGCRSLLLYPRGAPSVCCAVCHAV 31
                                    ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.0E-13434IPR005735Zinc finger, LSD1-type
PfamPF069431.0E-11731IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MQSQIVCHGC RSLLLYPRGA PSVCCAVCHA VTSVPPPDAH VATQSILSDK PRNQSQNVTV  60
VVENPMTVDE KGKLVSNVVV GVTTGDP
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00020.1.g00060.1.sm.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3146997e-33KF314699.1 Setaria italica clone Si18S 18S ribosomal RNA gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010904648.14e-24protein LSD1 isoform X2
SwissprotQ2QMB31e-21LOL2_ORYSJ; Protein LOL2
TrEMBLA0A0E0KGN65e-32A0A0E0KGN6_ORYPU; Uncharacterized protein
STRINGOMERI03G23730.12e-31(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2222047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.64e-17LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]