PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00020.1.g00110.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 473aa    MW: 51379.3 Da    PI: 6.146
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00020.1.g00110.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.15.9e-17288334455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    hn  ErrRRdriN+++  L+el+P++      K +Ka++L +A+eY++sLq
  Zpz_sc00020.1.g00110.1.sm.mk 288 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLRSLQ 334
                                   6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.49E-19281338No hitNo description
Gene3DG3DSA:4.10.280.106.2E-21281341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-20282344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.47284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-14288334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-18290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0010161Biological Processred light signaling pathway
GO:0010244Biological Processresponse to low fluence blue light stimulus by blue low-fluence system
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0010928Biological Processregulation of auxin mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MNHFVHDWAS SMGDAFAPLG FVPVIYGGLF LDDSGVIPFG SWLTSCESAM RFYSVEDDGL  60
MELLWCNGHV VMQSQEPRKP PRSDKEAAAV QDNEAEAWFQ CPIEDPLERD LFSELFGETP  120
ADVPSRAACK EEEDCAAVTA PQLSRPNKAC LEEIAGVSNC AVGKPDAGGD GAAATETGES  180
SMLTIGSSFC GSNHVQTTPR VVPPTPPRGE KAGARARDKR KQCDVAETEV RRTRAAGAFL  240
PRKRSITRPY RNNDTAAALQ DVEFESAVVT CEPAQKLKTA KRRRAAEVHN LSERRRRDRI  300
NEKMKALQEL IPHCNKTDKA SMLDEAIEYL RSLQLQLQVM WMGGGMATAA PVMFPAGVHQ  360
YMQRMVGPPH VAAMPRLLPF MAPPAVQSPP VGQMPVADPY AGCLAVDSLQ TPGPMHYLQG  420
VNFYQQQRPA PPPPPVVPGG SLPAATALTL PSDNTLHKEH ESSSKPETKG VNS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1213221ARARDKRKQ
2276282LKTAKRR
3281296RRRAAEVHNLSERRRR
4292297ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00606ChIP-seqTransfer from AT2G43010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00020.1.g00110.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805663.11e-139transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X3
TrEMBLA0A2S3HFC11e-137A0A2S3HFC1_9POAL; Uncharacterized protein
STRINGSi022196m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31073677
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43010.28e-41phytochrome interacting factor 4