PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00024.1.g00520.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 346aa    MW: 38537.4 Da    PI: 5.2707
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00024.1.g00520.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.6e-5261331128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratk 79 
                                   lppGfrFhPtd+elv +yLk+kv++ k+el evi+ +d+yk+ePw+Lp k  + +++ ew+fF++rd+ky++g+r+nrat+
  Zpz_sc00024.1.g00520.1.sm.mk   6 LPPGFRFHPTDDELVGYYLKRKVDNLKIEL-EVIPVIDLYKSEPWELPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATT 85 
                                   79****************************.99**************95334445667*********************** PP

                           NAM  80 sgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   +gyWkatgkd+++ + +g + g++ktLvfy+grap ge+tdWvmheyrl
  Zpz_sc00024.1.g00520.1.sm.mk  86 TGYWKATGKDRRIAC-DGGVYGVRKTLVFYRGRAPGGERTDWVMHEYRL 133
                                   ***************.9999***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.06E-613155IPR003441NAC domain
PROSITE profilePS5100557.2266156IPR003441NAC domain
PfamPF023654.4E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MGTMTLPPGF RFHPTDDELV GYYLKRKVDN LKIELEVIPV IDLYKSEPWE LPEKSFLPKR  60
DLEWFFFCPR DRKYPNGSRT NRATTTGYWK ATGKDRRIAC DGGVYGVRKT LVFYRGRAPG  120
GERTDWVMHE YRLCQDLAHG ASNFIGGYAL CRVIKRHEAG LLQGEPPARE KGASTAGGAR  180
GQMSKVPSNS SLGSSEQLST FTSANSSSPP PPVDMNRGMC AVAESCNNFQ NSFSYGGDVC  240
DMTVTDTTNE LPPPPQFAPI NWPQMPDMFF VVDDFPDAES RRPAPFFDAD MGSVSEHELK  300
WDTLSCAPMN TFPPAAAKTD LLCRQASDGV DDLAAFFFSD ENRIVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-52116012169NO APICAL MERISTEM PROTEIN
1ut4_B9e-52116012169NO APICAL MERISTEM PROTEIN
1ut7_A9e-52116012169NO APICAL MERISTEM PROTEIN
1ut7_B9e-52116012169NO APICAL MERISTEM PROTEIN
3swm_A9e-52116015172NAC domain-containing protein 19
3swm_B9e-52116015172NAC domain-containing protein 19
3swm_C9e-52116015172NAC domain-containing protein 19
3swm_D9e-52116015172NAC domain-containing protein 19
3swp_A9e-52116015172NAC domain-containing protein 19
3swp_B9e-52116015172NAC domain-containing protein 19
3swp_C9e-52116015172NAC domain-containing protein 19
3swp_D9e-52116015172NAC domain-containing protein 19
4dul_A9e-52116012169NAC domain-containing protein 19
4dul_B9e-52116012169NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00024.1.g00520.1.sm.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7954881e-115JF795488.1 Zea mays NAC transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792378.11e-164NAC domain-containing protein 71-like
TrEMBLA0A2T7C9T31e-163A0A2T7C9T3_9POAL; Uncharacterized protein
STRINGPavir.Ia03491.1.p1e-163(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62093854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.12e-82NAC domain containing protein 71