PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00026.1.g00780.1.am.mkhc
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bZIP
Protein Properties Length: 363aa    MW: 39891.9 Da    PI: 7.0078
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00026.1.g00780.1.am.mkhcgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.77.1e-10168215552
                                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
                                     kr++r   NR +A rs +RK  +i eLe+kv++L++e ++L  +l   
  Zpz_sc00026.1.g00780.1.am.mkhc 168 KRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLF 215
                                     9****************************************9888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-14164228IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.588166229IPR004827Basic-leucine zipper domain
PfamPF001701.4E-8168215IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.85E-11168219No hitNo description
Gene3DG3DSA:1.20.5.1703.0E-10168222No hitNo description
CDDcd147034.51E-23169218No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
SVPLYPPTHR HSCLCSLRHH QQRSLSRARA PGQPDPQRET ARAGRPPPNA AXXXXXXXXX  60
XEVAFRMPDD LDGPDGDGLD KIGSEDDLFS TFMDIEKISS VGPDCDRAAE SSSPPRPKHR  120
HSSSVDGSGL FFSPGSGAGS AASLAEVLEA KKAMSPEQLA ELAAIDPKRA KRILANRQSA  180
ARSKERKARY ITELERKVQT LQTEATTLSA QLTLFQRDTT GLSTENAELK IRLQAMEQQA  240
QLRDALNDAL KQELERLKLA TGEVTNSDDT YNMRFQHVPY NSSFFPFSQQ NTAQHQGSVQ  300
LPPAFHPPHN VPNHHMISHP NTLQDIMQQD SIGRFQGLDI GKGPPIVKSE SSSISASESS  360
SNF
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00026.1.g00780.1.am.mkhc
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025795608.11e-167transcription factor RF2b
SwissprotQ6S4P41e-150RF2B_ORYSJ; Transcription factor RF2b
TrEMBLA0A2S3IQW41e-166A0A2S3IQW4_9POAL; Uncharacterized protein
STRINGPavir.Ib01574.1.p1e-158(Panicum virgatum)
STRINGSi036380m1e-158(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26833683
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.14e-70bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]