PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00029.1.g00890.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C3H

Protein Properties

Length: 1061aa MW: 114179 Da PI: 8.6359

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00029.1.g00890.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.4e-07	627	647	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Zpz_sc00029.1.g00890.1.am.mk 627 PCPDFRK-GVCRRGDMCEYAHG 647 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	7.46E-15	409	487	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.069	409	484	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.037	409	439	IPR002110	Ankyrin repeat
Pfam	PF12796	9.6E-10	410	478	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.2E-16	410	488	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	12.85	444	479	IPR002110	Ankyrin repeat
SMART	SM00248	0.026	444	476	IPR002110	Ankyrin repeat
SMART	SM00356	1.1E-5	622	648	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-4	626	649	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.8E-4	627	647	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.375	627	649	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.8E-4	655	685	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	37	657	680	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1061 aa Download sequence Send to blast
MAQPNLPDQK PESAREQTPS DRRVFAELTG HVDVISLSEA TLHPRGLLKH SPDTCFKPGS 60 CLDGQGPVMA TEFRRPIAFP DSATRDRPKP WPLVTTTICC RVGGAPVFQQ EFAAPGPHPR 120 AAFTSSPGEE RMQASTAAGK GQGDADAGVG GFETRRKLER DVGRSTEPSD DGACRARHRR 180 TYVGRPRSSA KKLRGGGGPV GGREIGPVGW VITDRGAVAE MGGGLADDLL LTVSPSRAWE 240 IGPLFASSRT PRHKLAAFLS IFLSFFLSAA LHGDLGDLHG AVAAVVRWFA ASRAAVTLNS 300 WGVVFACLFW SDRERERGGV VRALMTNGMP ISAPPAASSD GGAAAVATPR KNVAEMAKHL 360 TIDTDDAFTG LLELAADDDA EGLSRALERA PPSAADEAGL WYGRQKVLGH RTPLMVAATY 420 GSLAVLRLLL SLPSVDVNRR CSPDGTTALH CAASGGSRTA VEAVKLLLGA GADADATDDL 480 GRRPADVISV PPKMVDVKFA LQDLIGCPKF EHCALRVVTR STNSITSPIS SPTAEYAQSP 540 SAALMMNTKF ADLPRVTTSE KKEYPVDPSL PDIKNSVYAS DEFRMYSFKI RPCSRAYSHD 600 WTECPFVHPG ENARRRDPRK YHYSCVPCPD FRKGVCRRGD MCEYAHGVFE CWLHPAQYRT 660 RLCKDGTSCN RRVCFFAHTT DELRPLYVST GSAVPSPRAS ATAAMEMAAA MGLMPGSPSS 720 VSAVMSPFTP PMSPSGNGMP PSLGWQQPNV PTLHLPGSSL QSSRLRSSLS ARDMPADDYS 780 LTQDLDSPLM NDHYSRLGSS TGNHSARTKS LNPSNLDDLF SAEMVLSPRY GNADKGAMFS 840 PSHKTAILNQ FQQQQQALLS PINTGAFSPK AMDNQQLPSH SYLLQTSLGL SSPGRMSPQC 900 VESGSPMNSH LAAALVKREK QQQQTMRIQD SAASAAPVQK RRIQACRQCL QLAKGLCPDP 960 VLSTANERRR PHVFPTCEEH GLLSCIPSSG HGLHCTKCRT ISVTAKARDR QRLSSPAAVK 1020 NPSCCHKAHP TIHRLCTDGL VEATHTHQML PLQASLEAMS H

Sequence ? help Back to Top

Protein Sequence Length: 1061 aa Download sequence Send to blast

MAQPNLPDQK PESAREQTPS DRRVFAELTG HVDVISLSEA TLHPRGLLKH SPDTCFKPGS  60
CLDGQGPVMA TEFRRPIAFP DSATRDRPKP WPLVTTTICC RVGGAPVFQQ EFAAPGPHPR  120
AAFTSSPGEE RMQASTAAGK GQGDADAGVG GFETRRKLER DVGRSTEPSD DGACRARHRR  180
TYVGRPRSSA KKLRGGGGPV GGREIGPVGW VITDRGAVAE MGGGLADDLL LTVSPSRAWE  240
IGPLFASSRT PRHKLAAFLS IFLSFFLSAA LHGDLGDLHG AVAAVVRWFA ASRAAVTLNS  300
WGVVFACLFW SDRERERGGV VRALMTNGMP ISAPPAASSD GGAAAVATPR KNVAEMAKHL  360
TIDTDDAFTG LLELAADDDA EGLSRALERA PPSAADEAGL WYGRQKVLGH RTPLMVAATY  420
GSLAVLRLLL SLPSVDVNRR CSPDGTTALH CAASGGSRTA VEAVKLLLGA GADADATDDL  480
GRRPADVISV PPKMVDVKFA LQDLIGCPKF EHCALRVVTR STNSITSPIS SPTAEYAQSP  540
SAALMMNTKF ADLPRVTTSE KKEYPVDPSL PDIKNSVYAS DEFRMYSFKI RPCSRAYSHD  600
WTECPFVHPG ENARRRDPRK YHYSCVPCPD FRKGVCRRGD MCEYAHGVFE CWLHPAQYRT  660
RLCKDGTSCN RRVCFFAHTT DELRPLYVST GSAVPSPRAS ATAAMEMAAA MGLMPGSPSS  720
VSAVMSPFTP PMSPSGNGMP PSLGWQQPNV PTLHLPGSSL QSSRLRSSLS ARDMPADDYS  780
LTQDLDSPLM NDHYSRLGSS TGNHSARTKS LNPSNLDDLF SAEMVLSPRY GNADKGAMFS  840
PSHKTAILNQ FQQQQQALLS PINTGAFSPK AMDNQQLPSH SYLLQTSLGL SSPGRMSPQC  900
VESGSPMNSH LAAALVKREK QQQQTMRIQD SAASAAPVQK RRIQACRQCL QLAKGLCPDP  960
VLSTANERRR PHVFPTCEEH GLLSCIPSSG HGLHCTKCRT ISVTAKARDR QRLSSPAAVK  1020
NPSCCHKAHP TIHRLCTDGL VEATHTHQML PLQASLEAMS H

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00029.1.g00890.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025794600.1	0.0	zinc finger CCCH domain-containing protein 24
Swissprot	Q10EL1	0.0	C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBL	A0A2S3IJ35	0.0	A0A2S3IJ35_9POAL; Uncharacterized protein
TrEMBL	A0A2T7C2E7	0.0	A0A2T7C2E7_9POAL; Uncharacterized protein
STRING	Sb01g011150.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP823	37	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	1e-170	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]