PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00033.1.g00790.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 152aa    MW: 16816 Da    PI: 8.7386
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00033.1.g00790.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.91.1e-2852146194
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekew.yfFskrdkkyatgkrknratk 79 
                                   lppGfrF+P deel+++yL++k+++  +    +++evd+yk+ePwdL p++ +++++ + yfF+ r+ k a+g r+nrat 
  Zpz_sc00033.1.g00790.1.sm.mk  52 LPPGFRFRPMDEELLTHYLTRKAANVGFAS-AAVREVDLYKAEPWDLlPAAGAGDDDGCrYFFCARRVKFASGLRTNRATP 131
                                   79*************************988.78*************95554444555556********************* PP

                           NAM  80 sgyWkatgkdkevls 94 
                                   +gyWk+tgkdk  ++
  Zpz_sc00033.1.g00790.1.sm.mk 132 AGYWKSTGKDKVWYE 146
                                   **********98776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.62E-3148143IPR003441NAC domain
PROSITE profilePS5100531.76852152IPR003441NAC domain
PfamPF023654.2E-1553142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MERAQGSQSL AQQACAFAAT RDGQLPANTN TQMRVPCIGT GNHPRDRPCT GLPPGFRFRP  60
MDEELLTHYL TRKAANVGFA SAAVREVDLY KAEPWDLLPA AGAGDDDGCR YFFCARRVKF  120
ASGLRTNRAT PAGYWKSTGK DKVWYEEDAR VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-245215117114NO APICAL MERISTEM PROTEIN
1ut4_B2e-245215117114NO APICAL MERISTEM PROTEIN
1ut7_A2e-245215117114NO APICAL MERISTEM PROTEIN
1ut7_B2e-245215117114NO APICAL MERISTEM PROTEIN
3swm_A3e-245215120117NAC domain-containing protein 19
3swm_B3e-245215120117NAC domain-containing protein 19
3swm_C3e-245215120117NAC domain-containing protein 19
3swm_D3e-245215120117NAC domain-containing protein 19
3swp_A3e-245215120117NAC domain-containing protein 19
3swp_B3e-245215120117NAC domain-containing protein 19
3swp_C3e-245215120117NAC domain-containing protein 19
3swp_D3e-245215120117NAC domain-containing protein 19
4dul_A2e-245215117114NAC domain-containing protein 19
4dul_B2e-245215117114NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00033.1.g00790.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:18305205, ECO:0000305|PubMed:15723790}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462370.18e-38NAC domain-containing protein 92
SwissprotQ9FLR34e-33NAC79_ARATH; NAC domain-containing protein 79
TrEMBLC5XC892e-36C5XC89_SORBI; Uncharacterized protein
STRINGSb02g024530.13e-37(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2313956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.12e-33NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Vidal EA,Álvarez JM,Gutiérrez RA
    Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function.
    Plant Signal Behav, 2014. 9(3): p. e28501
    [PMID:24642706]
  4. Lee MH,Jeon HS,Kim HG,Park OK
    An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164.
    New Phytol., 2017. 214(1): p. 343-360
    [PMID:28032643]