PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00033.1.g00940.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 346aa    MW: 36616.1 Da    PI: 6.513
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00033.1.g00940.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.3e-174592148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd+ lv +v+++G+g+W++++   g+ R+ k+c++rw +yl
  Zpz_sc00033.1.g00940.1.am.mk 45 KGPWTPEEDLMLVSYVQEHGPGNWRAVPTNTGLMRCSKSCRLRWTNYL 92
                                  79********************************************97 PP
2Myb_DNA-binding51.13e-1698143148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T +E++l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Zpz_sc00033.1.g00940.1.am.mk  98 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 143
                                   89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-243695IPR009057Homeodomain-like
PROSITE profilePS5129424.9354096IPR017930Myb domain
SuperFamilySSF466892.36E-3042139IPR009057Homeodomain-like
SMARTSM007177.5E-144494IPR001005SANT/Myb domain
PfamPF002491.5E-164592IPR001005SANT/Myb domain
CDDcd001671.55E-114792No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2496148IPR009057Homeodomain-like
PROSITE profilePS5129420.42797147IPR017930Myb domain
SMARTSM007174.3E-1697145IPR001005SANT/Myb domain
PfamPF002496.0E-1598143IPR001005SANT/Myb domain
CDDcd001672.20E-11100143No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDSLACRISV KFITNHNERV AAGEEEEGGG GMGRPPCCDK VGVKKGPWTP EEDLMLVSYV  60
QEHGPGNWRA VPTNTGLMRC SKSCRLRWTN YLRPGIKRGN FTDQEEKLIV HLQALLGNRW  120
AAIASYLPER TDNDIKNYWN THLKKKLKKM EAEEAGERGE GVVPPEGAGA GGGVGGEKPP  180
TVHKGQWERR LQTDIHTARQ ALREALSLDP SPPAKVAPLP TPAGSATYAS STENIARLLE  240
GWLRPGSGGK GPEASGSTST TGTTPQRPQC SGEGAASASA SHSGGAAAAA VQTPECSTET  300
SKMAGAAGAP PAFSMLENWL LDDGMGHGEV GLIDVVPLGD PSEFFN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C2e-26451474105C-Myb DNA-Binding Domain
1msf_C2e-26451474105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00033.1.g00940.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519141e-160JF951914.1 Aegilops tauschii clone TaMYB31 R2R3-MYB protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008652703.11e-170myb-related protein 306
SwissprotP813921e-104MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A096QJ491e-168A0A096QJ49_MAIZE; Transcription factor MYB30
TrEMBLA0A3L6DZ531e-168A0A3L6DZ53_MAIZE; Myb-related protein 306
STRINGGRMZM2G045748_P021e-169(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.15e-90myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]