PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00034.1.g00180.1.sm.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

G2-like

Protein Properties

Length: 223aa MW: 24392.7 Da PI: 8.848

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00034.1.g00180.1.sm.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	39.6	1.1e-12	37	61	1	25
G2-like 1 kprlrWtpeLHerFveaveqLGGse 25 kprlrWt +LHerFv+av+qLGG+e Zpz_sc00034.1.g00180.1.sm.mk 37 KPRLRWTADLHERFVDAVAQLGGPE 61 79*********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-11	34	78	IPR009057	Homeodomain-like
Pfam	PF14379	3.8E-20	99	144	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MFPPGLIHHR PXXXXSDAPP RAGPGGGPSL VLTADPKPRL RWTADLHERF VDAVAQLGGP 60 EIYPVELLSC GLKALKYRLG KQSGKEGSEQ SKDGKLSQEV KEALRAQMEV QRRLHEQVEV 120 QKRVQIRMDA LQKYIDAILE NACKLVTEQF ASSGFSISDP DLPDLSSGGV ICGPNDTLRS 180 SVFNQLSVSS IDSHSRGDKP SRSGVEGPPL HLQKPPELKR RSS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00034.1.g00180.1.sm.mk

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FP094105	3e-45	FP094105.1 Phyllostachys edulis cDNA clone: bphyst021e07, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004956514.1	1e-110	protein PHR1-LIKE 2 isoform X1
Swissprot	Q94A57	3e-40	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A368Q049	1e-109	A0A368Q049_SETIT; Uncharacterized protein
STRING	Si030441m	1e-109	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3427	38	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-41	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]