PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00034.1.g00380.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 667aa    MW: 71405.8 Da    PI: 10.0324
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00034.1.g00380.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.42.9e-532934201129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtdeelv++yL +k+ + ++   ++++e+d++k+ePw+Lp+k+k +e+ewyfFs rd+ky+tg r+nrat +g
  Zpz_sc00034.1.g00380.1.am.mk 293 LPPGFRFHPTDEELVSFYLLRKTLDGSFCG-RAVAEIDLNKCEPWELPEKAKMGEREWYFFSLRDRKYPTGLRTNRATVAG 372
                                   79*************************888.88***************99999**************************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                                   yWkatgkd+ev + +g+lvg+kktLvfy+grapkg+kt Wvmheyrle
  Zpz_sc00034.1.g00380.1.am.mk 373 YWKATGKDREVRAGGGALVGMKKTLVFYRGRAPKGQKTCWVMHEYRLE 420
                                   **********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-58291429IPR003441NAC domain
PROSITE profilePS5100555.318293476IPR003441NAC domain
PfamPF023653.5E-27294419IPR003441NAC domain
SuperFamilySSF1019412.09E-58464475IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010160Biological Processformation of organ boundary
GO:0010223Biological Processsecondary shoot formation
GO:0048366Biological Processleaf development
GO:0048504Biological Processregulation of timing of organ formation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MASEGSGGDT RQAFWIDLGG RQITRSSPPH LWSGSTSRSA YLLLSCKLRL PSVPCLSLIT  60
APAALLSLYT RRDEGRETPR KDKSNLHSFS RTLSSSLSAA DGQLCSLFLF HHVCHTSVQG  120
CQLTSIIELI SSRPSHLLKI ISTGGARARQ SRLERRRLPC PRRCTSPISS HLAWPPVPET  180
PRHKQSSGHA THRPSAVPGP SRARRRLPGT DSSNPPFTPP HPPSHLLLCS LPPAPAIKPA  240
THQEAGSMPK NKLPLSPSPA NEVKILLAGR PAGNRERGAM FGGALGLDVG SDLPPGFRFH  300
PTDEELVSFY LLRKTLDGSF CGRAVAEIDL NKCEPWELPE KAKMGEREWY FFSLRDRKYP  360
TGLRTNRATV AGYWKATGKD REVRAGGGAL VGMKKTLVFY RGRAPKGQKT CWVMHEYRLE  420
GSFAYNHFPG STRGLEQQHH SAQVRQSSGC CSCSGRSLRG YGNGADEWVI ARVFQKPGEV  480
APARKSRHHV VGLSSASGGD ASCFSDSTSA SVGGGGGAAS ASSAPRPLLT VPDASASLFA  540
ANANANAASN DNSCNLVTGR ELVPCFSTSA VPAMDATLGI GQYNYSPAFE PAPSFSNFRS  600
LQDNIQQLPL FLSSSASLLG GGGQHHHWGP GLAGSMEVKL EASMGRPVPP QMAVGPGQLD  660
GAYAWGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-4629341920145NAC domain-containing protein 19
3swm_B2e-4629341920145NAC domain-containing protein 19
3swm_C2e-4629341920145NAC domain-containing protein 19
3swm_D2e-4629341920145NAC domain-containing protein 19
3swp_A2e-4629341920145NAC domain-containing protein 19
3swp_B2e-4629341920145NAC domain-containing protein 19
3swp_C2e-4629341920145NAC domain-containing protein 19
3swp_D2e-4629341920145NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00562DAPTransfer from AT5G53950Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00034.1.g00380.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9704421e-121EU970442.1 Zea mays clone 345601 CUC2 mRNA, complete cds.
GenBankKJ7278471e-121KJ727847.1 Zea mays clone pUT5891 NAC transcription factor (NAC119) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025812735.11e-131protein CUP-SHAPED COTYLEDON 1-like
TrEMBLA0A3L6RXJ31e-136A0A3L6RXJ3_PANMI; Protein CUP-SHAPED COTYLEDON 1-like
STRINGSi007886m1e-128(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99403543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53950.12e-77NAC family protein