PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00035.1.g00350.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 668aa    MW: 71633.6 Da    PI: 7.2546
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00035.1.g00350.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS309.48.3e-951885533372
                          GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                   el+l+cA+ ++ gd   a+++L  l+  a p+gd+  Rla++f++ALa+r+ +++ e ++  +p +++      + +a+ +
  Zpz_sc00035.1.g00350.1.am.mk 188 ELVLACADRLHCGDVDGARRVLDVLRSVADPRGDAADRLAHHFARALARRVDGKGGEGAA--APAPAP---NMPSPSAYLA 263
                                   7899*************************************************5554443..444444...3455678889 PP

                          GRAS  84 fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeele 159
                                   ++++ P+l+f+hltaNqaIlea+++   +rvHi+D+d+ +G+QWp Llqa+a+R+    gpp++RiTg g     ++++l+
  Zpz_sc00035.1.g00350.1.am.mk 264 YNQIAPFLRFAHLTANQAILEAAATGaaRRVHIVDLDVVHGVQWPLLLQAMAKRAdpdLGPPEVRITGAGT----DRDMLR 340
                                   *********************9987667***************************66666***********....****** PP

                          GRAS 160 etgerLakfAeelgvpfefnvl...vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                                   +tg+rL+ fA++l++pf+f++l     ++l + +   L+++p+E+la+n+vl lhrl   +++l++    +L+ +ks++P+
  Zpz_sc00035.1.g00350.1.am.mk 341 RTGDRLRAFASSLNLPFRFDPLllpCPRQLGAGRATGLELHPDETLAINCVLFLHRLG-GEGELAD----FLRWIKSMNPT 416
                                   **********************77667789999************************8.6666666....*********** PP

                          GRAS 238 vvvvveqeadhnse...sFlerflealeyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlek 314
                                   vv+++e+e++ ++    ++ +r++ a++yysa+fd+lea +p+ s +r +vE+e+lg+ei  +v  c g +   r +++e 
  Zpz_sc00035.1.g00350.1.am.mk 417 VVTIAEREVSIGADcpdDLPRRVAAAMDYYSAVFDALEAMVPPGSTDRLSVEHEVLGQEIDAAVDpCPGGW---RSRRFEW 494
                                   **********98766779**********************************************7588888...888899* PP

                          GRAS 315 WrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSa 372
                                   W ++ ++aG++p pls++a++qa++llr ++ s+gy  ee++g+ +lgW++r+L+svS+
  Zpz_sc00035.1.g00350.1.am.mk 495 WASAARAAGLSPRPLSTFAVSQARYLLRLHYpSEGYVAEESDGACFLGWQTRRLMSVSS 553
                                   *********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.31160534IPR005202Transcription factor GRAS
PfamPF035142.9E-92188553IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MPSLKHGSVA PLTQSRAQLS HSIQLLCLAS LLQLFHLLAS STACAVWSTG RFQSRELELV  60
LAPVAAHEGQ ASMENGGDPR HSGSGTGGMI ANSALSSLCR PELRFACARA PLVFPLPVGV  120
AFPRTTHCRG ARFRVQEYFS ANSHALLRTL PPDAAMLGAP GGDRDDDGAA QPQEKRVSPV  180
AAPAYPKELV LACADRLHCG DVDGARRVLD VLRSVADPRG DAADRLAHHF ARALARRVDG  240
KGGEGAAAPA PAPNMPSPSA YLAYNQIAPF LRFAHLTANQ AILEAAATGA ARRVHIVDLD  300
VVHGVQWPLL LQAMAKRADP DLGPPEVRIT GAGTDRDMLR RTGDRLRAFA SSLNLPFRFD  360
PLLLPCPRQL GAGRATGLEL HPDETLAINC VLFLHRLGGE GELADFLRWI KSMNPTVVTI  420
AEREVSIGAD CPDDLPRRVA AAMDYYSAVF DALEAMVPPG STDRLSVEHE VLGQEIDAAV  480
DPCPGGWRSR RFEWWASAAR AAGLSPRPLS TFAVSQARYL LRLHYPSEGY VAEESDGACF  540
LGWQTRRLMS VSSDLEGKTM VAPSYVPFCH FLAADTQAAV QWVKKEDEDA VACVTDTLHG  600
ESTIGRSMRG SLGLLVSCPV LAQHETGMIP CISGQCRPNS SPVSYSPPTR SWGFSKPNTA  660
FGGKPCNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-4920955326373GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00035.1.g00350.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4917420.0AB491742.1 Zoysia japonica ZjLsL gene for lateral suppressor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806722.10.0protein MONOCULM 1
SwissprotQ84MM91e-134MOC_ORYSJ; Protein MONOCULM 1
TrEMBLW8VJT60.0W8VJT6_9POAL; Lateral suppressor
STRINGPavir.J22770.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36533479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.12e-71GRAS family protein
Publications ? help Back to Top
  1. Li X, et al.
    Control of tillering in rice.
    Nature, 2003. 422(6932): p. 618-21
    [PMID:12687001]
  2. Sun F, et al.
    Identification and functional analysis of the MOC1 interacting protein 1.
    J Genet Genomics, 2010. 37(1): p. 69-77
    [PMID:20171579]
  3. Sanyal A, et al.
    Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum.
    Mol. Biol. Evol., 2010. 27(11): p. 2487-506
    [PMID:20522726]
  4. Yan WH, et al.
    A major QTL, Ghd8, plays pleiotropic roles in regulating grain productivity, plant height, and heading date in rice.
    Mol Plant, 2011. 4(2): p. 319-30
    [PMID:21148627]
  5. Xu C, et al.
    Degradation of MONOCULM 1 by APC/C(TAD1) regulates rice tillering.
    Nat Commun, 2012. 3: p. 750
    [PMID:22434193]
  6. Lin Q, et al.
    Rice APC/C(TE) controls tillering by mediating the degradation of MONOCULM 1.
    Nat Commun, 2012. 3: p. 752
    [PMID:22434195]
  7. Liang WH,Shang F,Lin QT,Lou C,Zhang J
    Tillering and panicle branching genes in rice.
    Gene, 2014. 537(1): p. 1-5
    [PMID:24345551]
  8. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]