PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00036.1.g00350.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 269aa    MW: 29210 Da    PI: 10.7395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00036.1.g00350.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-11102146554
                                   HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                           HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                   h+e+ErrRR+riN  +++Lr+++P       k ++Ka+ L k+v+ +k L
  Zpz_sc00036.1.g00350.1.am.mk 102 HSEAERRRRERINAHLATLRRMIPDT-----KQMDKATLLAKVVDQVKAL 146
                                   9************************9.....67***********988877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.86997146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-13101155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.2E-13102153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-9102146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-11103152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MSFAVARATY YCKQQHEQLS PLLGCFLHLT SSSSSLYPSA PLISCHFLSL VMLFKLGGPV  60
LLRRQTSLAP PVVTVGPPEM SSSSGSGSGK RATEARRALK IHSEAERRRR ERINAHLATL  120
RRMIPDTKQM DKATLLAKVV DQVKALKRKA REAARSVPLP PEFDEVSIEC YTSDAAAGIV  180
GTDKVVYIKA SVSCDNRPDL IPGIIQALRR LRLRALRADM TSLGGRVRLV FTLCKEDGSG  240
AGASLGSLRE AVRQALAKAA SPEMRPGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00036.1.g00350.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8315687e-50CT831568.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN107N12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623162.16e-78putative transcription factor bHLH107
TrEMBLA0A0D9Y3K36e-82A0A0D9Y3K3_9ORYZ; Uncharacterized protein
STRINGOGLUM01G04250.11e-82(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-18bHLH family protein