PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00036.1.g00730.1.am.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GRAS
Protein Properties Length: 702aa    MW: 76143.3 Da    PI: 9.7903
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00036.1.g00730.1.am.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS22.61.1e-0731639821103
                          GRAS  21 qalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                                   ++lL++++++asp+gd +qRla++f+e ++ar+ +  ++ y   ++ +t  +  s  +  l++f   sP+  +  ++  ++
  Zpz_sc00036.1.g00730.1.am.mk 316 TELLKQIKQHASPQGDGTQRLAHCFAEDMNARVGDWHTKKYGEGSSISTLGDVYSLGILLLEMFTGRSPTDDMFRVISTST 396
                                   579******************************994444444444433333445555555566666666666666666666 PP

                          GRAS 102 Il 103
                                   I+
  Zpz_sc00036.1.g00730.1.am.mk 397 IV 398
                                   65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF520581.53E-3678263IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.105.1E-4087293IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM00369140140163IPR003591Leucine-rich repeat, typical subtype
PfamPF138552.6E-8142201IPR001611Leucine-rich repeat
SMARTSM00369180164187IPR003591Leucine-rich repeat, typical subtype
SMARTSM00369100188212IPR003591Leucine-rich repeat, typical subtype
SMARTSM0036947228251IPR003591Leucine-rich repeat, typical subtype
PfamPF035143.9E-5316398IPR005202Transcription factor GRAS
Gene3DG3DSA:1.10.510.105.7E-5359400No hitNo description
SuperFamilySSF561121.96E-5361390IPR011009Protein kinase-like domain
Gene3DG3DSA:3.80.10.107.4E-66402691IPR032675Leucine-rich repeat domain, L domain-like
PfamPF082631.7E-9402444IPR013210Leucine-rich repeat-containing N-terminal, plant-type
SuperFamilySSF520582.83E-53407691IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.53E-36460512IPR032675Leucine-rich repeat domain, L domain-like
SMARTSM0036927472496IPR003591Leucine-rich repeat, typical subtype
PfamPF005600.7475495IPR001611Leucine-rich repeat
PfamPF138551.7E-6558617IPR001611Leucine-rich repeat
SMARTSM00369230580604IPR003591Leucine-rich repeat, typical subtype
PfamPF138553.2E-7630690IPR001611Leucine-rich repeat
SMARTSM0036949653677IPR003591Leucine-rich repeat, typical subtype
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
MFEDSLDIHK FAEVALPSRA VEIAEPMIGR GVSCSKPKPR VRMPMRYGVV GMRAIRDAHL  60
MAGWKSGREE KPSGACCRRS VQITAPYLGS NRLSGAIPAS LGRLPRLANL NLSSCSSLTT  120
MEFQSNQLHG RLPPELGYKL TRLRTLKLWK NNLTGAIPAS LGNLSSLSYV SLAFNRFEAT  180
VPPGLGGIPG LRHLDLAYND LSGELPHSLY NLSSMEAFQG PSLKLSNLAA LKLLDLAGNM  240
LTGYVPSTLG RLATLEQLLL SMNKLQADDR KGWEFITSLS NCTQLKILLI NNNIGRGRQE  300
QQAERGAVGG RCHPGTELLK QIKQHASPQG DGTQRLAHCF AEDMNARVGD WHTKKYGEGS  360
SISTLGDVYS LGILLLEMFT GRSPTDDMFR VISTSTIVNA EADDEAALLS FKAAAISNNY  420
DDPLASWNRS SGAGGFCRWE GVTCGARHGR VVALSLPFHG LAGVLSPAIG SLSFLVTLNL  480
SNNRLSGDIP ASLGRLHRLR SLNLSSNALS GELPARGPGT PIQPASEIGN RMKRLKVIIL  540
WENNFTGTIP PSLANLSSLR NFAVGFNKLE GSIPPVFDGI LGLQNLDLAY NHLSAQLPRS  600
LYNLSSLKTL QIQGNKLHGG IPGDIGSRFP SLNILILGEN QFTGSIPDSV SNLSALQVLS  660
LYENRLNGHV PRIIGRLQDL RKLRLHHNLL EADNREGWEF IA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4mn8_A2e-37767009744LRR receptor-like serine/threonine-protein kinase FLS2
4mna_A1e-37737009624LRR receptor-like serine/threonine-protein kinase FLS2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00036.1.g00730.1.am.mk
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014660777.11e-103probable LRR receptor-like serine/threonine-protein kinase At3g47570
STRINGSi000141m1e-103(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1967222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.16e-07GRAS family protein