PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00040.1.g00380.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 473aa MW: 50698.6 Da PI: 9.0681

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00040.1.g00380.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.7e-05	240	263	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C dC+++F ++L+ H t H Zpz_sc00040.1.g00380.1.am.mk 240 FPCADCDEVFVKAESLELHRATrH 263 89******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.141	240	268	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	242	263	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.45E-16	265	472	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.4E-10	266	471	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 473 aa Download sequence Send to blast
MMARCPCMPR QAFDLGIRGL TCLFIRLPPR TITKDERPKR VVKGAISKLI MHGADKGATK 60 KKMNGQAGKT TTKKPSHSWM TMGLYYPSSG KSGGQAKEAM STEGKNGGNN EKSNSGGDKK 120 KRSMSLSITR SVACAGSICS TKESSVMNRD RGASASSRSL RAPNDVVSAA AVSATSSFNS 180 EATATTTVTV SSSSPFSSAL SSPLSSLGGS PFRGVQIRKL SGCYSCQSVF DPRSLGTSTF 240 PCADCDEVFV KAESLELHRA TRHAVSELGP EDTSRNIVQI IFQSSWLRKQ APVCRIERIL 300 KVQSGDGTVK RFEQYKESIK ERASNDQGKK NARCVADGNE LLRFYATTFT CALDASGGTA 360 LCGAPWTQCK LCGIIKDGFR VDEEGKIAVM ATSGRAHDMA DALSDGEKKA MLVCRVVAGR 420 VKRATDDTEL SEESDCDSVS PCSSDGVYSD LDELLVFNPR AILPCFVVIY SGY

Sequence ? help Back to Top

Protein Sequence Length: 473 aa Download sequence Send to blast

MMARCPCMPR QAFDLGIRGL TCLFIRLPPR TITKDERPKR VVKGAISKLI MHGADKGATK  60
KKMNGQAGKT TTKKPSHSWM TMGLYYPSSG KSGGQAKEAM STEGKNGGNN EKSNSGGDKK  120
KRSMSLSITR SVACAGSICS TKESSVMNRD RGASASSRSL RAPNDVVSAA AVSATSSFNS  180
EATATTTVTV SSSSPFSSAL SSPLSSLGGS PFRGVQIRKL SGCYSCQSVF DPRSLGTSTF  240
PCADCDEVFV KAESLELHRA TRHAVSELGP EDTSRNIVQI IFQSSWLRKQ APVCRIERIL  300
KVQSGDGTVK RFEQYKESIK ERASNDQGKK NARCVADGNE LLRFYATTFT CALDASGGTA  360
LCGAPWTQCK LCGIIKDGFR VDEEGKIAVM ATSGRAHDMA DALSDGEKKA MLVCRVVAGR  420
VKRATDDTEL SEESDCDSVS PCSSDGVYSD LDELLVFNPR AILPCFVVIY SGY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00040.1.g00380.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002449060.2	1e-165	cell wall integrity and stress response component 1
TrEMBL	A0A1B6PQ86	1e-164	A0A1B6PQ86_SORBI; Uncharacterized protein
STRING	Sb05g004260.1	1e-165	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	4e-76	C2H2-like zinc finger protein