PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zpz_sc00042.1.g00140.1.am.mk

Organism

Zoysia pacifica

Taxonomic ID

1070856

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 268aa MW: 29481.5 Da PI: 8.5706

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zpz_sc00042.1.g00140.1.am.mk	genome	ZGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	106.6	3e-33	2	75	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs rd+ky+tg r+nrat+sgyWk+tgkdke+++ g lvg+kktLvfy+grapkgekt+Wvmheyrl Zpz_sc00042.1.g00140.1.am.mk 2 GEKEWYFFSMRDRKYPTGIRTNRATDSGYWKTTGKDKEIFH-CGMLVGMKKTLVFYRGRAPKGEKTSWVMHEYRL 75 579************************************.99***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.526	1	96	IPR003441	NAC domain
SuperFamily	SSF101941	5.23E-39	2	96	IPR003441	NAC domain
Pfam	PF02365	1.4E-15	6	75	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MGEKEWYFFS MRDRKYPTGI RTNRATDSGY WKTTGKDKEI FHCGMLVGMK KTLVFYRGRA 60 PKGEKTSWVM HEYRLQNKFP YNPNKEEWVV CRVFKKCQII KMRPPTDSPT MGSPCHDGNQ 120 SLGELGELDV SSILGSLTPA SMHTSSSSPG EGFGHRMDMN AYLSWMAAAN QGAVAAATAA 180 MLPWATAPGL FSNVFAAPSP LGQKSLPYAG CSSSQPRDIS GVVANIGGDH AMFGSSVAKV 240 DMECDRQQQA PTPPEQQPGM DESTWRAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-33	1	96	68	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-33	1	96	68	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-33	1	96	68	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-33	1	96	68	165	NO APICAL MERISTEM PROTEIN
3swm_A	7e-33	1	96	71	168	NAC domain-containing protein 19
3swm_B	7e-33	1	96	71	168	NAC domain-containing protein 19
3swm_C	7e-33	1	96	71	168	NAC domain-containing protein 19
3swm_D	7e-33	1	96	71	168	NAC domain-containing protein 19
3swp_A	7e-33	1	96	71	168	NAC domain-containing protein 19
3swp_B	7e-33	1	96	71	168	NAC domain-containing protein 19
3swp_C	7e-33	1	96	71	168	NAC domain-containing protein 19
3swp_D	7e-33	1	96	71	168	NAC domain-containing protein 19
4dul_A	6e-33	1	96	68	165	NAC domain-containing protein 19
4dul_B	6e-33	1	96	68	165	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Zpz_sc00042.1.g00140.1.am.mk

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK363171	0.0	AK363171.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2013D22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025795943.1	1e-141	protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	A0A1E5WJW1	1e-148	A0A1E5WJW1_9POAL; Protein CUP-SHAPED COTYLEDON 2
STRING	Pavir.Ib03976.1.p	1e-141	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7919	34	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	3e-58	NAC domain containing protein 58