PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc00043.1.g00390.1.sm.mk
Organism
Zoysia pacifica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 345aa    MW: 37295.8 Da    PI: 4.9951
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc00043.1.g00390.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.41.7e-5091331128
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 
                                   lppGfrFhPtd elv++yL++k++g +l +  vi+evd+yk++Pw+Lp+k+ ++ekewyfFs+rd+ky++g+r+nra+ +g
  Zpz_sc00043.1.g00390.1.sm.mk   9 LPPGFRFHPTDGELVNYYLCRKCAGLPLAA-PVIAEVDLYKFDPWQLPEKAMGGEKEWYFFSPRDRKYPNGSRPNRAAGTG 88 
                                   79*************************999.89***************8888999************************** PP

                           NAM  82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                   yWkatg dk+v s   + v +kk Lvfy g+ pkg+kt+W+mheyrl
  Zpz_sc00043.1.g00390.1.sm.mk  89 YWKATGADKPVGS--PRPVAIKKALVFYAGKPPKGVKTNWIMHEYRL 133
                                   ***********99..779***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.41E-616163IPR003441NAC domain
PROSITE profilePS5100558.5589163IPR003441NAC domain
PfamPF023651.9E-2510133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDCGDALQLP PGFRFHPTDG ELVNYYLCRK CAGLPLAAPV IAEVDLYKFD PWQLPEKAMG  60
GEKEWYFFSP RDRKYPNGSR PNRAAGTGYW KATGADKPVG SPRPVAIKKA LVFYAGKPPK  120
GVKTNWIMHE YRLADVDRSA AARKRTNNAL RLDDWVLCRI YNKKGVIERY DTVDADAAVA  180
DDDVVKPAPA KTARGHAAVA TGGGGAAAAM KVEMSDYAYY DYEMDDTPAA EMLCFDRPFL  240
SSDPSADRGS DDSAPRVHAD NNSSSGSDHV LSPSPELPDR DHAESQLGAG WFDGVDWCGV  300
ADVVVDDTGA GALFGFGLPS PGGFASTRVD AAALGEMLAY LQRPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-7621698174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the promoter of the stress response gene LEA19. Involved in tolerance to abiotic stresses. {ECO:0000269|PubMed:20632034}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapZpz_sc00043.1.g00390.1.sm.mk
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by dehydration, salt stress, cold stress, abscisic acid (ABA) and methyl jasmonate. {ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0924080.0FP092408.1 Phyllostachys edulis cDNA clone: bphylf024g16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002450434.11e-151NAC domain-containing protein 71
SwissprotQ53NF71e-147NAC71_ORYSJ; NAC domain-containing protein 71
TrEMBLA0A1Z5RGY21e-150A0A1Z5RGY2_SORBI; Uncharacterized protein
STRINGSb05g005450.11e-150(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118043039
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08790.15e-96NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sperotto RA, et al.
    Identification of putative target genes to manipulate Fe and Zn concentrations in rice grains.
    J. Plant Physiol., 2010. 167(17): p. 1500-6
    [PMID:20580124]
  3. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  4. Kan CC,Chung TY,Juo YA,Hsieh MH
    Glutamine rapidly induces the expression of key transcription factor genes involved in nitrogen and stress responses in rice roots.
    BMC Genomics, 2015. 16(1): p. 731
    [PMID:26407850]